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BioLiP
>protein
KGRKLNYSVQDPIANYEAPITSGYKWSDDQIDEFFAG

The query sequence (length=37) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7suk:5 296 37 1.0000 0.1250 1.0000 5.68e-22 7ajt:JK, 7d63:RY, 6lqp:RY, 6lqq:RY, 6lqr:RY, 6lqu:RY, 6lqv:RY, 6zqb:JK, 6zqc:JK
2 6rxu:CZ 44 35 0.3784 0.3182 0.4000 8.80e-04 6rxv:CZ, 6rxz:CZ
3 7mq8:NN 42 20 0.2432 0.2143 0.4500 0.65 7mq9:NN
4 4xo4:A 870 19 0.2162 0.0092 0.4211 1.5 3b2p:A, 3b2x:A, 3b34:A, 3b37:A, 3b3b:A, 2dq6:A, 2dqm:A, 6g8b:A, 2hpo:A, 2hpt:A, 3ked:A, 5mfr:A, 5mfs:A, 5mft:A, 3puu:A, 4q4e:A, 4q4i:A, 3qjx:A, 4xmt:A, 4xmu:A, 4xmv:A, 4xmw:A, 4xmx:A, 4xmz:A, 4xn1:A, 4xn2:A, 4xn4:A, 4xn5:A, 4xn7:A, 4xn8:A, 4xn9:A, 4xna:A, 4xnb:A, 4xnd:A, 4xo3:A, 4xo5:A, 5yo1:A, 5yq1:A, 5yq2:A, 5yqb:A, 2zxg:A
5 5ljz:A 410 32 0.3243 0.0293 0.3750 1.8 5lk1:A
6 5uqd:A 324 16 0.1892 0.0216 0.4375 2.6
7 5ljx:A 382 23 0.2703 0.0262 0.4348 6.3 5lk2:A, 5lk3:A
8 6m0a:B 256 12 0.2162 0.0312 0.6667 6.8 6m0a:A, 6m0a:C, 6m0a:D
9 8xfc:D 517 28 0.2162 0.0155 0.2857 7.4 8wdb:D
10 1pcx:A 745 19 0.2432 0.0121 0.4737 10.0 1pd0:A, 1pd1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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