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BioLiP
>protein
KGMTPPKTVNFKMKGVADAAFSHEFHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCH
P

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ov0:A 318 81 1.0000 0.2547 1.0000 4.37e-53 3oue:A, 3ouq:A, 1rwj:A
2 3ov0:A 318 79 0.5679 0.1447 0.5823 2.52e-24 3oue:A, 3ouq:A, 1rwj:A
3 3ov0:A 318 76 0.4815 0.1226 0.5132 1.02e-17 3oue:A, 3ouq:A, 1rwj:A
4 3ov0:A 318 78 0.5062 0.1289 0.5256 1.36e-16 3oue:A, 3ouq:A, 1rwj:A
5 6m0q:A 504 43 0.1728 0.0278 0.3256 0.35 4fas:A, 4fas:C, 4fas:B, 1fgj:A, 1fgj:B, 6m0p:A, 6m0p:C, 6m0p:E, 6m0q:C, 6m0q:E, 6m0q:G, 6m0q:I, 6m0q:K, 4n4n:A, 4n4n:C, 4n4n:E, 4n4o:A, 4n4o:C, 4n4o:E
6 6h5l:A 506 43 0.1605 0.0257 0.3023 0.37
7 2e84:A 513 83 0.3333 0.0526 0.3253 0.68
8 8qnn:A 259 36 0.1728 0.0541 0.3889 0.86
9 6yxy:BX 133 46 0.2099 0.1278 0.3696 3.0 7aoi:BX, 6hiv:BX, 6hix:BX
10 3bxu:A 71 74 0.2716 0.3099 0.2973 4.9 3bxu:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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