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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTV
ISGLPASTSTERLEFVDDDHRVLSFRIVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVD
TVVKLNLQKLGVAATSAPMHDD

The query sequence (length=182) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3nj1:A 182 182 1.0000 1.0000 1.0000 1.54e-135 5jnn:A, 3kaz:B, 3kb0:A, 3kb3:A, 3kdi:A, 4la7:A, 4lg5:A, 4lga:A, 4lgb:A, 7mwn:A, 3nj0:A, 3nj0:B, 3nj0:C, 3nmh:A, 3nmh:B, 3nmh:C, 3nmp:A, 3nmp:B, 3nmp:C, 3nmt:A, 3nmv:A, 3nr4:A, 3nr4:B, 3nr4:C, 3ns2:A, 3ns2:B, 3ns2:C, 3ujl:A, 5vr7:A, 5vro:A, 5vs5:A, 5vsq:A, 5vsr:A, 5vt7:A
2 3oji:B 185 182 0.6044 0.5946 0.6044 2.85e-74 4ds8:A, 4dsb:A, 4dsb:B, 4dsc:A, 4dsc:B, 4jda:A, 4jda:B, 4jda:C, 4jda:D, 5jo1:A, 5jo2:A, 3oji:A
3 4oic:A 182 175 0.5989 0.5989 0.6229 1.01e-70
4 5ujv:A 192 175 0.5385 0.5104 0.5600 1.72e-69 5ujv:B, 5ujv:C
5 5mob:A 193 173 0.5549 0.5233 0.5838 5.61e-69 7z1q:A, 7z1r:D000, 7z1s:A
6 3k3k:B 183 173 0.5385 0.5355 0.5665 3.65e-68 8ey0:A, 3k90:A, 3k90:D, 3njo:A, 3njo:B, 3njo:C, 5or2:A, 5or6:A, 3qn1:A, 5ur4:A, 5ur5:A, 5ur6:A, 3wg8:A, 4wvo:A, 5ygv:A, 5ygv:B, 3zvu:A
7 8ay6:A 190 176 0.5330 0.5105 0.5511 3.41e-64 7avw:A, 8ay3:A, 8ay7:A, 8ay8:A, 8ay9:A, 8aya:A, 5mmx:B, 5mmx:A, 5mn0:A, 6zuc:A
8 3nef:A 182 171 0.5165 0.5165 0.5497 5.24e-56 9j6i:B, 3jrq:B, 3jrs:A, 3jrs:B, 3jrs:C, 3kdj:A, 3neg:A, 3neg:B, 3nmn:A, 3nmn:C
9 3w9r:A 171 157 0.4121 0.4386 0.4777 5.49e-52 3oqu:A, 3oqu:B
10 5gwo:D 167 158 0.4176 0.4551 0.4810 4.19e-50 5gwo:C, 5gwp:C, 5gwp:D, 5zcg:C, 5zcg:D, 5zch:C, 5zch:D, 5zcl:C, 5zcl:D, 5zcu:C, 5zcu:D
11 7mlc:A 156 146 0.3791 0.4423 0.4726 9.79e-46 7mld:A, 6nwb:A, 6nwc:A, 3r6p:A
12 4c94:A 161 75 0.1099 0.1242 0.2667 0.003 4c94:B, 4c94:C, 4c94:D, 4c94:E
13 1txc:A 157 74 0.0989 0.1146 0.2432 0.028 1txc:B
14 5i8f:A 164 54 0.0769 0.0854 0.2593 0.090 4n3e:A, 4n3e:B, 4n3e:Z, 4n3e:b, 4n3e:C, 4n3e:D, 4n3e:E, 4n3e:F, 4n3e:G, 4n3e:H, 4n3e:I, 4n3e:J, 4n3e:K, 4n3e:L, 4n3e:P, 4n3e:M, 4n3e:N, 4n3e:O, 4n3e:Q, 4n3e:S, 4n3e:R, 4n3e:U, 4n3e:V, 4n3e:W, 4n3e:X, 4n3e:Y, 4n3e:a, 6sjj:B, 6sjj:j, 6sjj:A, 6sjj:R, 6sjj:Q, 6sjj:P, 6sjj:O, 6sjj:N, 6sjj:M, 6sjj:L, 6sjj:K, 6sjj:J, 6sjj:I, 6sjj:a, 6sjj:Y, 6sjj:H, 6sjj:G, 6sjj:F, 6sjj:D, 6sjj:f, 6sjj:E, 6sjj:C, 6sjj:e, 6sjj:d, 6sjj:c, 6sjj:b, 6sjj:Z, 6sjj:X, 6sjj:W, 6sjj:V, 6sjj:U, 6sjj:T, 6sjj:S, 6sjj:i, 6sjj:h, 6sjj:g
15 2qim:A 157 51 0.0659 0.0764 0.2353 0.10 3e85:A, 5mxb:A, 5mxw:A
16 2vq5:A 173 94 0.1264 0.1329 0.2447 0.11 5non:A, 5non:B, 5non:C, 6rp3:A, 2vq5:B, 6z82:A
17 2flh:B 153 76 0.1264 0.1503 0.3026 0.23 3c0v:A, 3c0v:B, 3c0v:C, 3c0v:D, 2flh:A, 2flh:C, 2flh:D, 4psb:A
18 4gu3:A 205 39 0.0769 0.0683 0.3590 0.33 4gu3:B, 4gu3:C, 4gu4:A, 4gu4:B, 4gu4:C, 4xc5:A, 4xc5:B, 4xc5:C
19 6awr:A 156 51 0.0604 0.0705 0.2157 0.39 6awr:B, 6aws:A, 6aws:C, 6awt:A, 6awt:B, 6awt:C, 6awt:D, 6awu:A, 6awu:B, 6awu:C, 6awu:D, 6awv:A, 6awv:B, 6awv:C, 6aww:B, 6aww:E, 6aww:D, 6aww:C, 6ax0:A, 6ax0:B, 6b1d:A, 6b1d:C, 4ma6:A
20 7x7i:A 583 81 0.1099 0.0343 0.2469 0.57 7x7i:B, 7x7j:A, 7x7j:B, 7x7k:A, 7x7k:B
21 4ryv:A 155 85 0.0824 0.0968 0.1765 0.62
22 8c6j:S 635 31 0.0659 0.0189 0.3871 3.9 7abi:O, 8ch6:X, 6ff4:O, 8i0r:J, 8i0s:J, 8i0t:J, 5mqf:O, 7qtt:X, 6zym:O
23 8q1b:E 182 56 0.0934 0.0934 0.3036 4.5 8q1b:P
24 6v8l:D 152 51 0.0604 0.0724 0.2157 7.8 6v8m:A, 6v8m:B, 6v8s:A, 6v8s:G, 6v8s:B, 6v8s:C, 6v8s:D, 6v8s:F, 6v8s:E, 6v8s:H, 6v8s:I, 6v8s:O, 6v8s:J, 6v8s:K, 6v8s:L, 6v8s:N, 6v8s:M, 6v8s:P
25 2lko:A 138 19 0.0495 0.0652 0.4737 7.9
26 2c7j:A 162 69 0.1044 0.1173 0.2754 8.0 2c7k:A, 2c7l:A, 2j96:A, 2j96:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218