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BioLiP
>protein
KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYRNKARDIINKHNHKRRHIGKRGRKERENSSQNETLKVTCLSNKE
KRHIMHVKKMNQKELAQTSIDTLKLLYDGSPGYSKVFVDANRFDIGDLVKRAQTSRSRDETCESNPFPRLNNPKKLEPPK
ILSQWSNTIPKTSIFYSV

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8w2o:B 178 178 1.0000 1.0000 1.0000 1.31e-133
2 6n7p:B 195 194 0.8933 0.8154 0.8196 8.65e-115 6g90:C, 6n7r:B, 6n7x:B, 7oqc:C, 7oqe:C, 5zwn:R
3 2vrd:A 61 50 0.2191 0.6393 0.7800 2.12e-22 4pjo:L, 4pjo:l, 4pjo:M, 4pjo:m, 6qx9:1C, 7vpx:N
4 8q7n:X 81 30 0.0787 0.1728 0.4667 0.013 8h6k:4I, 8h6l:4I, 8qo9:X, 8qpe:X, 8qzs:X
5 8y6o:V 101 51 0.0899 0.1584 0.3137 0.38
6 3zj2:A 71 25 0.0730 0.1831 0.5200 2.7
7 2l7x:A 77 38 0.0787 0.1818 0.3684 3.9
8 5d2r:A 420 80 0.1292 0.0548 0.2875 4.3 4q6m:A, 4q6n:A, 4q6o:A, 4q6p:A, 4q6q:A, 4wck:A, 4wcl:A, 4wcm:A, 4wcn:A
9 8hfr:ox 143 32 0.0674 0.0839 0.3750 5.5 6ft6:I, 3jct:I, 6m62:I, 6n8j:I, 6n8k:I, 6n8l:I, 7ug6:I, 7uoo:I, 7uqb:I, 7uqz:I, 7v08:I, 6ylg:I, 6ylh:I, 6yly:I, 7z34:I
10 7rr5:R 355 70 0.1124 0.0563 0.2857 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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