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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KFRRSGRLVDLTNYLLTHPHELIPLTFFSERYESAKSSISEDLTIIKQTFEQQGIGTLLTVPGAAGGVKYIPKMKQAEAE
EFVQTLGQSLANPERILPGGYVYLTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRK
DNKVTEGSTVSINYVSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVEAERLVDEYMS
LLTLSTINMKEKSIEIQNGNFLRFF

The query sequence (length=265) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7rmw:A 270 268 1.0000 0.9815 0.9888 0.0 1p4a:A, 1p4a:B, 1p4a:C, 1p4a:D, 7rmw:B, 7rmw:C, 7rmw:F
2 6w1i:B 194 124 0.1396 0.1907 0.2984 1.13e-12 2fxv:A, 2fxv:B, 6w1i:A, 6w1i:C, 6w1i:D, 1y0b:A, 1y0b:B, 1y0b:C, 1y0b:D
3 4m0k:C 176 150 0.1547 0.2330 0.2733 9.04e-10 4m0k:A, 4m0k:B, 4m0k:D
4 6fci:A 179 124 0.1170 0.1732 0.2500 9.49e-07 6fch:A, 6fch:B, 6fci:D, 6fci:B, 6fci:C, 6fcl:A, 6fcl:B, 6fd4:B, 6fd4:A, 6fd5:A, 6fd5:B, 6fd6:A, 6fd6:B, 6hgp:A, 6hgq:A, 6hgq:C, 6hgq:D, 6hgq:B, 6hgr:A, 6hgr:B, 6hgs:A, 6hgs:B, 1ore:A, 4x44:A, 4x45:B, 1zn7:A, 1zn7:B, 1zn8:A, 1zn8:B, 1zn9:B
5 5yw5:A 178 134 0.1321 0.1966 0.2612 1.06e-06 5yw5:B, 5yw5:C, 5yw5:D
6 5vn4:A 237 129 0.1321 0.1477 0.2713 2.60e-06 5vn4:B
7 5znq:A 183 120 0.1208 0.1749 0.2667 3.09e-06 5b6h:A, 5y07:A, 5y07:B, 5zc7:A, 5zc7:B, 5zmi:A, 5znq:B, 5zoc:A
8 2wns:B 199 135 0.1283 0.1709 0.2519 1.19e-04 2wns:A
9 1l1q:A 181 114 0.1170 0.1713 0.2719 1.37e-04 1l1r:A
10 3qw4:C 447 131 0.1245 0.0738 0.2519 5.97e-04 3qw4:B
11 8izj:B 183 123 0.1170 0.1694 0.2520 6.82e-04 8izj:A, 7y94:A, 7y94:B
12 5vjp:B 179 111 0.1132 0.1676 0.2703 0.005 1g2p:A, 5vjn:A, 5vjn:B, 5vjp:A
13 2ps1:A 224 136 0.1283 0.1518 0.2500 0.010 2prz:A, 2prz:B, 2prz:C, 2prz:D, 2ps1:B, 4wml:A, 4wn3:A
14 3dez:A 206 97 0.0868 0.1117 0.2371 0.047 3dez:B
15 1qb7:A 236 115 0.0981 0.1102 0.2261 0.050 1qb8:A
16 5ckw:B 400 98 0.1057 0.0700 0.2857 0.058 5ckw:A
17 1lh0:A 213 118 0.1057 0.1315 0.2373 0.064 1lh0:B, 1opr:A, 1oro:A, 1sto:A
18 4rv4:B 211 96 0.0830 0.1043 0.2292 0.13 4rv4:A, 4rv4:C
19 5fbu:A 733 119 0.1245 0.0450 0.2773 0.17
20 7dt1:A 846 49 0.0642 0.0201 0.3469 0.20 7dt1:B
21 5brn:B 194 48 0.0566 0.0773 0.3125 0.22 5bsk:A, 5bsk:B, 5bsk:C, 5bsk:D, 4kn6:A, 8tpy:A, 8tpy:B, 8tpy:C, 8tpy:D
22 7f06:A 181 122 0.1208 0.1768 0.2623 0.27 7f06:B
23 1mzv:A 216 120 0.1057 0.1296 0.2333 0.37
24 2vfa:B 205 38 0.0453 0.0585 0.3158 0.63 2vfa:A
25 1bzy:A 214 42 0.0491 0.0607 0.3095 0.79 6bnj:A, 6bnj:B, 6bnj:C, 6bnj:D, 5brn:A, 5brn:C, 5brn:D, 1bzy:B, 1bzy:C, 1bzy:D, 1d6n:A, 1d6n:B, 3gep:A, 3gep:B, 3ggc:A, 3ggc:B, 3ggj:A, 3ggj:B, 5hia:A, 5hia:B, 5hia:C, 5hia:D, 1hmp:A, 1hmp:B, 4ijq:A, 4ijq:B, 4ijq:C, 4ijq:D, 4rab:A, 4rab:B, 4rab:C, 4rab:D, 4rac:A, 4rac:B, 4rac:C, 4rac:D, 4rad:A, 4rad:B, 4rad:C, 4rad:D, 4rad:E, 4rad:F, 4rad:G, 4rad:H, 4ran:A, 4ran:B, 4ran:C, 4ran:D, 4rao:A, 4rao:B, 4rao:C, 4rao:D, 4raq:A, 4raq:B, 4raq:C, 4raq:D, 7san:A, 7san:B, 7san:C, 7san:D, 8tpv:A, 8tpv:B, 8tpv:C, 8tpv:D, 5w8v:A, 5w8v:B, 5w8v:C, 5w8v:D
26 6vgs:BBB 543 45 0.0679 0.0331 0.4000 1.2 6vgs:AAA, 6vgs:CCC, 6vgs:DDD
27 5xtk:A 150 88 0.0830 0.1467 0.2500 2.5
28 5hkf:B 166 144 0.1245 0.1988 0.2292 3.3
29 1i6n:A 278 65 0.0679 0.0647 0.2769 3.7
30 1a95:B 150 56 0.0566 0.1000 0.2679 3.9 1a95:C, 1a96:B, 1a96:C, 1a97:B, 1a97:C, 4jit:B, 4jit:C
31 3e18:A 348 33 0.0491 0.0374 0.3939 4.0 3e18:B
32 3qku:A 359 98 0.0943 0.0696 0.2551 6.2 1f2u:A, 1f2u:D, 1f2u:C, 1f2u:B, 3qks:A, 3qks:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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