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BioLiP
>protein
KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDI
HESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNN
LVVDFRSLPIMKQWAKVIYDATHSVQLPGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLEGIIEAI
LEIREVASKYYETI

The query sequence (length=254) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2a21:A 263 262 1.0000 0.9658 0.9695 0.0 2a21:B, 2a2i:A, 2a2i:B, 3e0i:A, 3e0i:B, 3e12:A, 3e12:B, 2ef9:A, 2ef9:B, 1fwn:A, 1fwn:B, 1fws:A, 1fws:B, 1fwt:A, 1fwt:B, 1fww:A, 1fww:B, 1fx6:A, 1fx6:B, 1fxp:A, 1fxp:B, 1fxq:A, 1fxq:B, 1fy6:A, 1fy6:B, 1jcx:A, 1jcx:B, 1jcy:A, 1jcy:B, 1lrn:A, 1lrn:B, 1lro:A, 1lro:B, 1lrq:A, 1lrq:B, 2nwr:A, 2nwr:B, 2nws:A, 2nws:B, 2nx1:A, 2nx1:B, 2nx3:A, 2nx3:B, 2nx3:C, 2nx3:D, 2nx3:E, 2nx3:F, 2nx3:G, 2nx3:H, 2nx3:I, 2nx3:J, 2nx3:K, 2nx3:L, 2nxg:A, 2nxg:B, 2nxh:A, 2nxh:B, 2nxh:C, 2nxh:D, 2nxh:E, 2nxh:F, 2nxh:G, 2nxh:H, 2nxh:I, 2nxh:J, 2nxh:K, 2nxh:L, 2nxi:A, 2nxi:B, 2nxi:C, 2nxi:D, 2nxi:E, 2nxi:F, 2nxi:G, 2nxi:H, 2nxi:I, 2nxi:J, 2nxi:K, 2nxi:L, 1pck:A, 1pck:B, 1pcw:A, 1pcw:B, 1pe1:A, 1pe1:B, 1t8x:A, 1t8x:B, 1t96:A, 1t96:B, 1zha:A, 1zha:B, 1zji:A, 1zji:B
2 4z1d:A 256 263 0.5079 0.5039 0.4905 9.42e-79 4z1d:B
3 1g7u:A 284 262 0.4646 0.4155 0.4504 1.58e-76 1g7v:A, 1gg0:A, 1phq:A, 1phw:A, 1pl9:A, 1q3n:A, 1x6u:A
4 3und:B 284 259 0.4646 0.4155 0.4556 1.58e-74 3tmq:A, 3tmq:C, 3und:A, 3und:C, 3und:D
5 3fyo:D 261 236 0.4370 0.4253 0.4703 3.02e-68 3fyp:D
6 4grs:A 333 231 0.3071 0.2342 0.3377 1.13e-31 4c1k:A, 4c1k:B, 4c1k:C, 4c1k:D, 4c1k:E, 4c1k:F, 4c1l:A, 4c1l:B, 4grs:C, 4grs:B, 4grs:D, 1zco:A, 1zco:B
7 5j6f:A 352 240 0.2913 0.2102 0.3083 5.08e-29 5j6f:B
8 3pg9:A 338 231 0.3110 0.2337 0.3420 1.69e-28 3pg9:F, 3pg9:B, 3pg9:G, 3pg9:C, 3pg9:E, 3pg9:D, 3pg9:H, 1rzm:A, 1rzm:B
9 3nvt:A 345 239 0.3031 0.2232 0.3222 3.40e-28 3nvt:B, 3tfc:A, 3tfc:B
10 1vs1:D 271 229 0.2913 0.2731 0.3231 1.21e-12 1vs1:A, 1vs1:B, 1vs1:C
11 3au2:A 575 106 0.1378 0.0609 0.3302 0.20 3au6:A, 3auo:A, 3auo:B, 3b0x:A, 3b0y:A
12 5d61:A 292 49 0.0669 0.0582 0.3469 0.38 5d62:A, 5d63:A, 3ef2:A, 3ef2:B, 3ef2:C, 3ef2:D, 2iho:A, 5mu9:A, 6tsl:AAA, 6tsm:AAA, 6tsn:AAA, 6tso:AAA, 6tsp:AAA, 6tsq:AAA, 6tsr:AAA, 6yh0:AAA
13 7reu:B 358 50 0.0512 0.0363 0.2600 0.79 7reu:A
14 5dcb:C 348 45 0.0551 0.0402 0.3111 2.0 5cz0:A, 5cz0:B, 5cz0:C, 5cz0:D, 5czs:A, 5czs:B, 5czs:C, 5czs:D, 5czt:A, 5czt:B, 5czt:C, 5czt:D, 5d02:A, 5d02:B, 5d02:C, 5d02:D, 5d03:A, 5d03:B, 5d03:C, 5d03:D, 5d04:C, 5d04:D, 5d05:A, 5d05:B, 5d05:C, 5d05:D, 5d09:A, 5d09:B, 5d09:C, 5d09:D, 5dcb:A, 5dcb:B, 5dcb:D, 5dcd:A, 5dcd:B, 5dcd:C, 5dcd:D, 5dce:A, 5dce:B, 5dce:C, 5dce:D, 4hsn:A, 4hsn:B, 4hsn:C, 4hsn:D, 4hso:A, 4hso:B, 4hso:C, 4hso:D, 4ixx:A, 4ixx:B, 4ixx:C, 4ixx:D, 4uc5:A, 4uc5:B, 4uc5:C, 4uc5:D, 4ucg:A, 4ucg:B, 4ucg:C, 4ucg:D, 4uma:A, 4uma:B, 4uma:C, 4uma:D, 4umb:A, 4umb:B, 4umb:C, 4umb:D, 4umc:A, 4umc:B, 4umc:C, 4umc:D
15 4iib:A 834 32 0.0551 0.0168 0.4375 2.9 4iib:B, 4iic:A, 4iic:B, 4iid:A, 4iid:B, 4iie:A, 4iie:B, 4iif:A, 4iif:B, 4iig:A, 4iig:B, 4iih:A, 4iih:B
16 6org:A 450 71 0.0630 0.0356 0.2254 3.2 6or4:A, 6or4:B, 6orf:A, 6orf:B, 6org:B, 6orh:A, 6orh:B
17 5fji:A 840 32 0.0551 0.0167 0.4375 3.4 5fji:B
18 1of6:A 350 45 0.0512 0.0371 0.2889 3.8 1hfb:A, 1hfb:B, 1hfb:C, 1hfb:D, 1hfb:E, 1hfb:F, 1hfb:G, 1hfb:H, 1oab:A, 1oab:B, 1of6:B, 1of6:C, 1of6:D, 1of6:E, 1of6:F, 1of6:G, 1of6:H, 1of8:A, 1of8:B, 1ofa:B, 1ofa:A, 1ofb:A, 1ofb:B, 1ofo:A, 1ofo:B, 1ofq:A, 1ofq:B, 1ofq:C, 1ofq:D, 1ofr:A, 1ofr:H, 1ofr:C, 1ofr:D, 1ofr:E, 1ofr:F, 1ofr:G, 1ofr:B, 1og0:A, 1og0:B, 1og0:C, 1og0:D, 1og0:E, 1og0:F, 1og0:G, 1og0:H
19 6agm:A 334 91 0.0787 0.0599 0.2198 5.5 6agm:B, 6agm:C, 6agm:D
20 1cb7:B 483 47 0.0709 0.0373 0.3830 6.4 1cb7:D, 1ccw:B, 1ccw:D, 6h9e:B, 6h9e:D, 6h9f:B, 6h9f:D, 1i9c:B, 1i9c:D
21 4fl0:B 409 24 0.0472 0.0293 0.5000 6.7 4fl0:A
22 6jdb:A 290 62 0.0827 0.0724 0.3387 7.6
23 1g66:A 207 28 0.0472 0.0580 0.4286 9.0
24 6rm3:LPP 83 25 0.0472 0.1446 0.4800 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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