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BioLiP
>protein
KFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEARELAPEEEVKLE

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2hf1:A 61 59 1.0000 0.9672 1.0000 3.74e-36 2hf1:B
2 2kpi:A 56 49 0.4237 0.4464 0.5102 3.83e-09
3 6zxw:H 57 48 0.3559 0.3684 0.4375 3.83e-04
4 8dh3:M 775 15 0.1695 0.0129 0.6667 5.2 8dh0:N
5 1i8t:A 367 28 0.1864 0.0300 0.3929 6.4 1i8t:B
6 1e94:E 408 36 0.2203 0.0319 0.3611 7.1 1do0:A, 1do0:B, 1do0:D, 1do0:E, 1do2:A, 1do2:C, 1e94:F, 1hqy:E, 1hqy:F, 1ht1:E, 1ht1:F, 1ht1:G, 1ht1:I, 1ht2:E, 1ht2:F, 1ht2:G, 1ht2:H, 6pxk:H, 6pxk:L, 6pxk:B, 6pxl:C, 6pxl:D, 6pxl:H, 6pxl:L, 1yyf:A, 1yyf:B
7 8dhl:B 853 23 0.1525 0.0106 0.3913 7.5 8dhl:A
8 8ois:AB 279 15 0.1186 0.0251 0.4667 7.8 7a5i:b6, 7a5k:b6, 8k2a:Sk, 7po2:1, 7qi4:A1, 7qi5:A1, 7qi6:A1, 8xt0:Sk, 8xt2:Sk
9 5j6b:A 481 41 0.2712 0.0333 0.3902 8.2 5j6b:B, 5j6b:C, 5j6b:D
10 3jd5:k 275 15 0.1186 0.0255 0.4667 9.4 8oin:AB, 8oip:AB, 6ydw:Ak
11 5txv:B 337 23 0.1695 0.0297 0.4348 9.6 6pxk:J, 6pxk:D, 6pxl:E, 6pxl:J, 5txv:A, 5txv:D, 5txv:G, 5txv:J, 5txv:K, 5txv:N, 5txv:S, 5txv:U

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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