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BioLiP
>protein
KFIYGDVDGNGSVRINDAVLIRDYVLGKINEFPYEYGMLAADVDGNGSIKSIDAVLVRDYVLGKIFLFPVEEK

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4uyp:B 73 73 0.9452 0.9452 0.9452 1.90e-42 4uyp:D, 4uyq:B
2 5nrk:B 68 66 0.4521 0.4853 0.5000 1.36e-16 5nrk:D, 5nrm:B
3 5nrk:B 68 32 0.2329 0.2500 0.5312 1.55e-04 5nrk:D, 5nrm:B
4 4dh2:B 72 67 0.3562 0.3611 0.3881 4.58e-09 4dh2:D
5 8x3a:A 151 72 0.3562 0.1722 0.3611 1.22e-08 8x39:A, 8x39:B
6 8x3a:A 151 60 0.3151 0.1523 0.3833 1.20e-06 8x39:A, 8x39:B
7 8x3a:A 151 29 0.1370 0.0662 0.3448 1.2 8x39:A, 8x39:B
8 4fl4:A 68 66 0.2740 0.2941 0.3030 4.53e-06 4fl4:D, 4fl4:G, 4fl4:J
9 5m2o:B 74 68 0.3425 0.3378 0.3676 1.50e-05
10 2ccl:B 62 60 0.2877 0.3387 0.3500 2.32e-04 2ccl:D, 1ohz:B
11 2ccl:B 62 30 0.1644 0.1935 0.4000 5.1 2ccl:D, 1ohz:B
12 5lxv:B 65 70 0.3425 0.3846 0.3571 3.40e-04 5lxv:D
13 1daq:A 71 67 0.2877 0.2958 0.3134 8.87e-04 1dav:A, 2mte:A
14 1daq:A 71 33 0.1370 0.1408 0.3030 4.6 1dav:A, 2mte:A
15 3ul4:B 63 61 0.2740 0.3175 0.3279 0.001
16 5m2s:B 79 72 0.3014 0.2785 0.3056 0.39
17 8cqw:p0 79 52 0.2055 0.1899 0.2885 0.39
18 4atq:F 444 48 0.2192 0.0360 0.3333 0.92 4atp:A, 4atp:B, 4atp:C, 4atp:D, 4atp:E, 4atp:F, 4atp:G, 4atp:H, 4atp:I, 4atp:J, 4atp:K, 4atp:L, 4atq:A, 4atq:B, 4atq:C, 4atq:D, 4atq:E, 4atq:G, 4atq:H, 4atq:I, 4atq:J, 4atq:K, 4atq:L
19 5n5p:B 87 51 0.2055 0.1724 0.2941 1.8 5n5p:D
20 7mvz:A 1641 22 0.1096 0.0049 0.3636 3.7 7tbi:F1, 7tbi:F2, 7tbj:F1, 7tbj:F2, 7tbk:F1, 7tbk:F2, 7tbl:F1, 7tbl:F2, 7tbm:F1, 7tbm:F2
21 5in4:A 355 59 0.2740 0.0563 0.3390 4.8 6gpj:A, 6gpj:B, 6gpj:D, 6gpj:C, 6gpk:A, 6gpk:B, 6gpk:C, 6gpk:D, 6gpl:B, 6gpl:E, 6gpl:C, 6gpl:D, 5in4:B, 5in4:C, 5in4:D, 5in5:A, 5in5:B, 5in5:C, 5in5:D, 6q94:B, 6q94:A, 6q94:C, 6q94:E, 6q94:D, 6q94:F, 6q94:G, 6q94:H, 1t2a:A, 1t2a:D, 1t2a:B, 1t2a:C
22 2wop:A 554 30 0.1781 0.0235 0.4333 4.9 2wok:A
23 4rzy:A 439 36 0.1233 0.0205 0.2500 5.7 4rzy:B, 4rzy:C, 4rzy:D, 4rzz:A, 4rzz:B, 4rzz:C, 4rzz:D, 4s00:A, 4s00:B, 4s00:C, 4s00:D, 4s01:A, 4s01:B, 4s01:C, 4s01:D
24 2vn6:B 64 63 0.1918 0.2188 0.2222 7.3 2vn5:B, 2vn5:D
25 2y3n:B 60 58 0.2466 0.3000 0.3103 7.4
26 5i4m:A 414 27 0.1781 0.0314 0.4815 8.4 5i4m:B, 5thw:A, 5thw:B, 5thw:C, 5thw:D
27 4kpn:A 318 18 0.1233 0.0283 0.5000 9.3 4kpn:B, 4kpn:C, 4kpn:D, 4kpn:E, 4kpn:F, 4kpn:G, 4kpn:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218