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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KEVCYERLGCFSDDSPWSGITERPLHILPWSPKDVNTRFLLYTNENPNNFQEVAADSSSISGSNFKTNRKTRFIIHGFID
KGEENWLANVCKNLFKVESVNCICVDWKGGSRTGYTQASQNIRIVGAEVAYFVEFLQSAFGYSPSNVHVIGHSLGAHAAG
EAGRRTNGTIGRITGLDPAEPCFQGTPELVRLDPSDAKFVDVIHTDGAPIVPNLGFGMSQVVGHLDFFPNGGVEMPGCKK
NILSQIVDIDGIWEGTRDFAACNHLRSYKYYTDSIVNPDGFAGFPCASYNVFTANKCFPCPSGGCPQMGHYADRYPGKTN
DVGQKFYLDTGDASNFARWRYKVSVTLSGKKVTGHILVSLFGNKGNSKQYEIFKGTLKPDSTHSNEFDSDVDVGDLQMVK
FIWYNNVINPTLPRVGASKIIVETNVGKQFNFCSPETVREEVLLTLTPC

The query sequence (length=449) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1lpa:B 449 449 1.0000 1.0000 1.0000 0.0 1lpb:B
2 1eth:A 448 448 0.8597 0.8616 0.8616 0.0 1eth:C
3 1hpl:A 449 448 0.8307 0.8307 0.8326 0.0 1hpl:B
4 1gpl:A 432 449 0.7305 0.7593 0.7305 0.0
5 1rp1:A 441 451 0.6882 0.7007 0.6851 0.0
6 2ppl:A 449 451 0.6771 0.6771 0.6741 0.0
7 2pvs:B 445 452 0.6325 0.6382 0.6283 0.0 2oxe:B, 2oxe:A, 2pvs:A
8 1w52:X 448 452 0.5791 0.5804 0.5752 0.0
9 6oau:A 422 417 0.2940 0.3128 0.3165 8.11e-59 6oau:B, 6oaz:A, 6oaz:B, 6oaz:C, 6oaz:D
10 6ob0:A 442 422 0.2895 0.2941 0.3081 2.30e-58 6e7k:A, 6e7k:B, 6ob0:B, 6ob0:C, 6ob0:D
11 7si6:A 873 56 0.0379 0.0195 0.3036 1.4 7si3:A, 7si7:A
12 6ncf:B 676 64 0.0379 0.0251 0.2656 1.5 6ncf:A, 6ncf:C, 6ncf:D, 3o8y:A, 3o8y:B, 7ttk:A, 7ttk:B, 7ttl:A, 7ttl:D, 3v92:B, 3v92:A, 3v98:A, 3v98:B
13 3v99:B 639 64 0.0379 0.0266 0.2656 1.6
14 4tzm:A 239 62 0.0423 0.0795 0.3065 1.6 4tzl:A, 4tzl:B, 4tzm:B, 4tzn:A, 4tzn:B, 4tzs:A, 4tzs:B
15 3e0n:B 251 116 0.0690 0.1235 0.2672 2.8 3dfl:A, 3e0p:B, 3e16:B, 3fvf:B, 3gyl:B
16 8wuc:A 528 99 0.0601 0.0511 0.2727 4.5 8wuc:B, 8wuc:C, 8wuc:D, 8wuc:E, 8wuc:F, 8wuc:G, 8wuc:H, 8wuc:I, 8wuc:J, 8wuc:K, 8wuc:L, 8wuc:M, 8wuc:N
17 3fcx:B 275 78 0.0379 0.0618 0.2179 5.0 3fcx:A
18 6zea:A 308 94 0.0535 0.0779 0.2553 6.8
19 8tk2:A 181 84 0.0490 0.1215 0.2619 7.8 3f81:A, 3f81:B, 1j4x:A, 8tk2:B, 8tk3:A
20 7c4d:A 261 203 0.0980 0.1686 0.2167 8.1
21 3gu3:A 276 70 0.0401 0.0652 0.2571 9.0 3gu3:B
22 2fli:C 219 34 0.0312 0.0639 0.4118 9.2 2fli:A, 2fli:B, 2fli:D, 2fli:E, 2fli:F, 2fli:G, 2fli:H, 2fli:I, 2fli:J, 2fli:K, 2fli:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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