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BioLiP
>protein
KERVITEFWDGKIIMVSPDDPKYALKKAEEVRELVDSELGFQQVSLRCPSQTRTYMFVSNEKKIVGCLIAEPIREAYRVL
AEPPSLHSWRCSTEPEPAICGISRIWVFALMRRKAIASRMVDAVRSSFMYGSVLTTEEIAFSDPTPDGKLFASTYCKVPD
FLVYNFV

The query sequence (length=167) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5n1u:A 170 167 1.0000 0.9824 1.0000 8.85e-124 5n1u:B, 5n1w:B, 5n1w:A, 5n22:A, 5n22:C, 5n22:D, 5n22:B
2 6sp0:A 197 166 0.6467 0.5482 0.6506 3.61e-78
3 5t53:A 187 156 0.5988 0.5348 0.6410 5.04e-70
4 4mxe:A 179 180 0.6228 0.5810 0.5778 5.05e-70 4mxe:B
5 5fuv:A 173 62 0.1138 0.1098 0.3065 0.92 5fuv:B, 5fuw:A, 5fuw:B, 5fux:A, 5fux:B, 5fuy:A, 5fuy:B, 5fuy:C, 5fuy:D, 5fuy:E, 5fuy:F
6 5idy:B 264 56 0.1018 0.0644 0.3036 1.5 5idy:A, 5vps:A
7 5mpf:B 202 64 0.0958 0.0792 0.2500 2.2 5mpf:A
8 5bxa:A 414 78 0.1377 0.0556 0.2949 6.1
9 8jvd:A 153 31 0.0719 0.0784 0.3871 9.0 8juc:A, 8jve:A, 8jvl:A, 5ngz:A, 5ojj:A, 5ojj:B, 5ojj:C, 5ojj:D, 5ojj:E, 5ojj:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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