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BioLiP
>protein
KERIDILFSLAERVFPYSPELAKRYVELALLVQQKAKVKIPRKWKRRYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLE
CGHIMRYPYIK

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ki7:B 97 91 1.0000 0.9381 1.0000 2.46e-62 2k3r:A
2 1x0t:A 106 89 0.7802 0.6698 0.7978 5.42e-51 2zae:B, 2zae:D
3 6k0b:G 120 90 0.5495 0.4167 0.5556 3.52e-27 6k0a:G, 6k0a:H, 6k0b:H
4 6agb:K 128 44 0.1758 0.1250 0.3636 0.066 6ah3:K
5 2xkl:A 149 75 0.2308 0.1409 0.2800 0.16
6 6xe6:A 826 31 0.1429 0.0157 0.4194 0.49
7 6fci:A 179 42 0.1429 0.0726 0.3095 0.66 6fch:A, 6fch:B, 6fci:D, 6fci:B, 6fci:C, 6fcl:A, 6fcl:B, 6fd4:B, 6fd4:A, 6fd5:A, 6fd5:B, 6fd6:A, 6fd6:B, 6hgp:A, 6hgq:A, 6hgq:C, 6hgq:D, 6hgq:B, 6hgr:A, 6hgr:B, 6hgs:A, 6hgs:B, 1ore:A, 4x44:A, 4x45:B, 1zn7:A, 1zn7:B, 1zn8:A, 1zn8:B, 1zn9:B
8 7e1q:A 366 44 0.1648 0.0410 0.3409 1.6 7e1r:A, 7e1r:C, 7e1s:C, 7e1s:A
9 2pv0:B 347 48 0.1758 0.0461 0.3333 1.8 2pv0:A, 2pv0:C, 2pvc:B, 2pvc:A, 2pvc:C
10 7r81:H1 194 81 0.2637 0.1237 0.2963 7.0
11 6n8m:V 393 42 0.1429 0.0331 0.3095 8.2 5h4p:w, 8hfr:vV, 6n8k:v, 6n8l:v, 6n8n:V, 6n8o:V, 6qik:w, 6qtz:w, 6rzz:w, 6s05:w, 5t62:V, 5t6r:V, 7z34:v
12 7e2i:D 907 31 0.1319 0.0132 0.3871 8.5 7e2g:D, 7e2h:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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