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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KEQITVKHQLDKNGTKVPKNPKKVVVFDFGSLDTLDKLGLDDIVAGLPKQVLPKYLSKFKDDKYADVGSLKEPDFDKVAE
LDPDLIIISARQSESYKEFSKIAPTIYLGVDTAKYMESFKSDAETIGKIFDKEDKVKDELANIDHSIADVKKTAEKLNKN
GLVIMANDGKISAFGPKSRYGLIHDVFGVAPADQNIKASTHGQSVSYEYISKTNPDYLFVIDRGTAIGETSSTKQVVEND
YVKNVNAVKNGHVIYLDSATWYLSGGGLESMTQMIKEVKDGLEKE

The query sequence (length=285) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3gfv:B 285 285 1.0000 1.0000 1.0000 0.0
2 8bax:A 281 282 0.5228 0.5302 0.5284 6.98e-103 8b7x:A, 8baw:A, 8baw:B
3 8bf6:A 278 282 0.5404 0.5540 0.5461 4.50e-101 8bj9:A
4 5ad1:A 290 279 0.4211 0.4138 0.4301 2.56e-80 5a1j:A, 5a5d:A, 5a5v:A, 5adv:A, 5adv:B, 5adv:C, 5adw:A, 5adw:B, 5adw:C, 2chu:A, 2chu:B, 5lwh:A, 5oah:A, 5oah:B, 5od5:A, 5od5:C, 5tcy:A, 5tcy:B, 5tcy:C
5 6mfl:A 284 292 0.3614 0.3627 0.3527 6.09e-56 6mfl:B
6 7sf6:A 294 294 0.2982 0.2891 0.2891 3.30e-30
7 3tny:A 280 275 0.2912 0.2964 0.3018 1.39e-20
8 4b8y:A 277 269 0.2772 0.2852 0.2937 2.79e-19 4fil:A, 4fil:B, 4fil:C, 4fil:D
9 3lhs:A 291 296 0.3193 0.3127 0.3074 8.47e-18 3li2:A, 3li2:B
10 3mwf:A 292 288 0.2877 0.2808 0.2847 1.67e-13
11 7w8f:A 278 140 0.1509 0.1547 0.3071 1.99e-13
12 2why:A 283 265 0.2421 0.2438 0.2604 2.79e-08 2xuz:A, 2xv1:A
13 5ggx:D 267 141 0.1228 0.1311 0.2482 3.63e-06 5ggx:A, 5ggx:B, 5ggx:C
14 3tlk:A 296 210 0.1789 0.1723 0.2429 2.36e-05 3tlk:C, 3tlk:B
15 4mlz:A 299 251 0.2000 0.1906 0.2271 4.63e-04 4mlz:B
16 1efd:N 262 145 0.1193 0.1298 0.2345 0.003 1esz:A, 1k2v:N, 1k7s:N
17 2q8p:A 258 250 0.2070 0.2287 0.2360 0.003 2q8q:A
18 5cr9:A 290 151 0.1123 0.1103 0.2119 0.006
19 7orl:A 2183 61 0.0632 0.0082 0.2951 1.5 7oa4:AAA, 7oa4:BBB, 7oa4:DDD, 7oa4:GGG, 7ork:A, 7plr:AAA, 7plr:BBB, 7plr:DDD, 7plr:GGG, 2xi5:A, 2xi5:B, 2xi5:C, 2xi5:D, 2xi7:A, 2xi7:B, 2xi7:C, 2xi7:D
20 7oro:A 2008 61 0.0632 0.0090 0.2951 1.6 7ori:A
21 7orj:A 2129 61 0.0632 0.0085 0.2951 1.6
22 7orm:A 2145 61 0.0632 0.0084 0.2951 1.6
23 6z8k:A 2158 61 0.0632 0.0083 0.2951 1.6 5amq:A, 7orn:A
24 3hvo:A 559 62 0.0632 0.0322 0.2903 1.8 3hvo:B
25 1cb8:A 674 47 0.0491 0.0208 0.2979 1.9 1hm2:A, 1hm3:A, 1hmu:A, 1hmw:A
26 5oj1:A 675 35 0.0526 0.0222 0.4286 2.2 5oiz:A, 2z2m:B, 2z2m:E, 2zc3:B, 2zc3:E, 2zc4:B, 2zc4:E
27 5oj0:A 658 35 0.0526 0.0228 0.4286 2.2 1qmf:A
28 1pyy:A 607 35 0.0526 0.0247 0.4286 2.4
29 1reo:A 484 81 0.0737 0.0434 0.2593 7.8 1tdk:A, 1tdn:A, 1tdo:A
30 6ien:B 454 50 0.0561 0.0352 0.3200 7.9 6ien:A, 6ien:C, 6ien:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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