Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KELKIVICGGGSTYTPGIVKDLLDQRQKINIKELWLYDIDEERQNKVALIVKEVIKTEAPEVVLKVTVNPKEAFTDADYI
MAQMRVGGLKMRVKDEQICLKHGCVGQETCGAGGMTYGMRTIYPMVQLIDYCEEYASKKYWIVNYSNPAAIVAKATYKLR
PKARIINICDMPVEIEARMAEILDCKLEDIESDYFGLNHYGWFTHVRCKGVDVTDKLKEHVRKYGYVSEASMNDALLKDP
DWVHTFKNSALISSMFTDYLPNTYWQYYLMPDSIVDYMDINNTRGMQVINGREKRIFKAAEDIREGKPVDLQQFYVGVHG
KFIVKVVESLIHDERSRQLVIVPNNGAIENLSDDATVEIPGYVTDRGVEPVRVGSIPRFYKGLIEQQDACEGLLVEAAIE
HSYEKALMAFTMNRTIPSSLVAKKLLDDMIEANKGYWPELK

The query sequence (length=441) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6wbt:A 442 441 1.0000 0.9977 1.0000 0.0 6wbt:B, 6wbt:C, 6wbt:D
2 1u8x:X 436 442 0.4626 0.4679 0.4615 4.22e-139
3 6dvv:A 435 444 0.4649 0.4713 0.4617 3.17e-137 6dux:A, 6dux:B, 6dvv:B
4 6vc6:B 440 445 0.4422 0.4432 0.4382 8.37e-123 6vc6:A, 6vc6:C, 6vc6:D
5 5c3m:B 411 443 0.3129 0.3358 0.3115 6.37e-74 5c3m:A, 5c3m:C, 5c3m:D
6 1up7:A 414 439 0.3152 0.3357 0.3166 6.67e-60 1up6:A, 1up6:C, 1up6:G, 1up7:B, 1up7:C, 1up7:D, 1up7:E, 1up7:F, 1up7:G, 1up7:H
7 3fef:A 434 462 0.2449 0.2488 0.2338 1.18e-22 3fef:B, 3fef:C, 3fef:D
8 1obb:A 478 411 0.2177 0.2008 0.2336 1.40e-14 1obb:B
9 1vjt:A 471 420 0.2041 0.1911 0.2143 3.01e-09 7br4:A, 7brf:A, 7ctl:A, 7ctm:A, 6kcx:A, 3u95:A, 3u95:B, 3u95:C, 3u95:D, 3u95:E, 3u95:F
10 5hzd:A 476 112 0.0612 0.0567 0.2411 0.37 5i49:A, 5ido:A
11 3vvb:A 270 43 0.0295 0.0481 0.3023 2.2
12 1s40:A 187 93 0.0522 0.1230 0.2473 2.4
13 3w1v:A 347 43 0.0295 0.0375 0.3023 2.7 4g5h:A, 3vvc:A, 3w1v:B
14 4d8f:B 334 99 0.0612 0.0808 0.2727 7.7 2ani:A, 4d8f:A, 4d8f:C, 4d8f:D, 4d8g:A, 4d8g:B, 4d8g:C, 4d8g:D, 4m1i:A, 4m1i:B, 4m1i:C, 4m1i:D, 1syy:A
15 8d2o:A 749 34 0.0295 0.0174 0.3824 8.1
16 5ijj:A 175 28 0.0249 0.0629 0.3929 8.9 5ijj:B
17 8d2q:A 906 34 0.0295 0.0143 0.3824 9.7

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218