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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KEKHVPEMKLSGNHVDIRCGATVMHPATEKHYIGTIRLFGITKEGNVTLELGCQQIWPGLGEPVASFRVCDLEKYKGLLA
VAYCNLHGCWENYMEL

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4d7p:A 96 96 1.0000 1.0000 1.0000 1.81e-69
2 2hvb:B 115 102 0.3750 0.3130 0.3529 8.82e-10 2hvb:A, 2hvb:C, 2hvb:D
3 1do6:A 124 111 0.3750 0.2903 0.3243 5.56e-09 1do6:B, 1dqi:A, 1dqi:B, 1dqi:C, 1dqi:D, 1dqk:A, 1dqk:B, 1dqk:C, 1dqk:D
4 1y07:C 124 90 0.3333 0.2581 0.3556 6.28e-08 1y07:A, 1y07:B, 1y07:D
5 2amu:A 132 115 0.3229 0.2348 0.2696 1.62e-06 3qzb:A
6 2ji2:A 126 91 0.3438 0.2619 0.3626 1.72e-06 2ji1:A, 2ji1:B, 2ji1:C, 2ji1:D, 2ji2:B, 2ji2:C, 2ji2:D, 2ji3:A, 2ji3:B, 2ji3:C, 2ji3:D, 1vzg:A, 1vzg:B, 1vzh:A, 1vzh:B, 1vzi:A, 1vzi:B
7 4brj:A 124 104 0.3542 0.2742 0.3269 1.97e-06 4bk8:A, 4brv:A, 4brv:B, 4brv:C, 4brv:D
8 6gq8:A 109 87 0.2708 0.2385 0.2989 1.75e-04 6gq8:B, 6gq8:C, 6gq8:D
9 4bfk:B 125 107 0.3229 0.2480 0.2897 2.97e-04 4bff:A, 4bff:B, 4bff:C, 4bff:D, 4bff:E, 4bff:F, 4bff:G, 4bff:H, 4bff:I, 4bff:J, 4bff:K, 4bff:L, 4bff:M, 4bff:N, 4bff:O, 4bff:P, 4bfj:A, 4bfj:B, 4bfk:A, 4bfk:C, 4bfk:D, 4bgl:A, 4bgl:B, 4bgl:C, 4bgl:D, 4c4b:A, 4c4b:B, 4c4u:A, 4c4u:B, 4c4u:C, 4c4u:D, 4c4u:E, 4c4u:F, 4c4u:G, 4c4u:H, 4c4u:I, 4c4u:J, 4c4u:K, 4c4u:L, 4c4u:M, 4c4u:N, 4c4u:O, 4c4u:P
10 1dfx:A 125 91 0.3229 0.2480 0.3407 8.71e-04
11 8gxv:A 353 79 0.2812 0.0765 0.3418 0.066
12 7w2t:A 773 59 0.1771 0.0220 0.2881 0.39 5bvu:A, 5bx2:A, 5bx3:A, 5bx4:A, 5bx5:A, 7dks:A, 7dkt:A, 7dku:A, 7dkv:A, 7dkw:A, 7dkw:B, 7dkx:A, 7dky:A, 8i5o:A, 8i5p:A, 8i5p:B, 8i5q:A, 8i5q:B, 8i5r:A, 8i5s:A, 8i5t:A, 8i5u:A, 8jbo:A, 8jbo:B, 5ncx:A, 5npf:A, 5o0s:A, 5ost:A, 8r06:A, 7w2s:A, 7w2t:B, 7w2v:A, 7w2w:A, 7w2x:A
13 8fr9:B 374 35 0.1250 0.0321 0.3429 0.39 8frb:D
14 8hbh:B 577 33 0.1562 0.0260 0.4545 0.93 7d9r:B, 7d9s:B, 7d9t:B, 7d9u:B, 8hbe:B, 8hbf:B, 6jt0:B, 6jt1:B, 6jt2:B, 5mnw:A
15 5epi:B 756 45 0.1458 0.0185 0.3111 1.9 8bdr:B, 8be0:B, 8bf5:B, 5epi:F, 5epi:J, 5epi:N, 5epi:R, 5epi:V, 6f5o:B, 5fmz:E, 5m3j:B, 5msg:B, 6qcs:B, 6qct:B, 6qcv:B, 6qcw:B, 6qcx:B, 7r1f:B, 8rn1:B, 8rn4:B, 8rn5:B, 8rn7:B, 8rn8:E, 8rn9:B, 8rnc:B, 6t0w:B, 4wrt:B, 4wsa:B, 7z42:E, 7z42:B, 7z43:BBB
16 3dx5:A 274 45 0.1458 0.0511 0.3111 3.0
17 3nvt:A 345 24 0.1250 0.0348 0.5000 3.3 3nvt:B, 3tfc:A, 3tfc:B
18 8b1n:B 410 16 0.1042 0.0244 0.6250 4.7
19 8b1n:A 433 16 0.1042 0.0231 0.6250 4.7 8byh:A, 8byh:B, 8ri0:A, 8ri0:B
20 8cbm:E 384 16 0.1042 0.0260 0.6250 5.0
21 4dwj:B 203 47 0.1354 0.0640 0.2766 5.6 2ccg:A, 2ccg:B, 2ccj:A, 2ccj:B, 4dwj:A, 4dwj:C, 4dwj:D, 4dwj:F, 4dwj:G, 4dwj:H, 4eaq:A, 4eaq:B, 4gfd:A, 4gfd:B, 4gsy:A, 4gsy:B, 4hdc:A, 4hdc:B, 4hej:A, 4hlc:A, 4hlc:B, 4hld:A, 4hld:B, 4qg7:A, 4qg7:B, 4qga:A, 4qga:B, 4qgf:A, 4qgf:B, 4qgg:A, 4qgg:B, 4qgh:A, 4qgh:B, 4xwa:A, 4xwa:B
22 5wyr:B 248 17 0.1146 0.0444 0.6471 5.8 6afk:A, 6afk:B, 6jki:A, 6jki:B, 6joe:A, 6joe:B, 5wyq:A, 5wyq:B, 5wyr:A, 5zhm:A, 5zhm:B, 5zhn:A, 5zhn:B
23 7ned:A 545 39 0.1354 0.0239 0.3333 6.0
24 4gi2:A 428 14 0.0833 0.0187 0.5714 7.5 4gi2:B
25 7q2d:A 286 43 0.1354 0.0455 0.3023 7.6 2fk8:A, 3ha3:A, 3ha5:A, 3ha7:A, 7q2b:A, 7q2c:A, 7q2e:A, 7q2f:A, 7q2g:A, 7q2h:A
26 6imc:D 340 34 0.1146 0.0324 0.3235 8.0 6imc:A, 6imc:B, 6imc:C, 6ksf:A, 6l94:A
27 3fy1:A 377 35 0.1042 0.0265 0.2857 9.1 3fy1:B, 3rm4:A, 3rm4:B, 3rm8:A, 3rm8:B, 3rm9:A, 3rm9:B, 3rme:A, 3rme:B, 2ybt:A, 2ybt:B, 2ybt:C, 2ybt:D, 2ybt:E, 2ybt:F, 2ybu:A, 2ybu:B, 2ybu:C, 2ybu:D, 2ybu:E, 2ybu:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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