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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KEIGEEPDPEKLEAFLEEKGGNALSHLGFLGDKRFFYSSDGNALIQFAKVGQRLVVLGDPSGREDSFPLVIKEFLHAADQ
KGYLVIFYQIEREDMALYHDFGYRFFKLGEEAIVDLDTFTISGKKRAGLRAIYNRFEREGYTFHVEQPPFSREFLNELRQ
VSDEWLGRKKEKGFSLGFFQEDYLQKAPIAVLKSEEGEIVAFMNIMPMYREGEISIDLMRYSKKAPKGIMDALFIYLFQW
GKEQGYTAFNMGMAPLSNVGTSFWTERLAAVIFNNVSYMYSFSGLRSFKEKYKPVWRGKYLAYRKNRSLPVTMILVTRLI
GRRTK

The query sequence (length=325) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4v36:A 325 325 1.0000 1.0000 1.0000 0.0
2 7f47:A 830 322 0.3877 0.1518 0.3913 1.24e-64
3 6lvf:B 793 312 0.3785 0.1551 0.3942 8.68e-62 6lvf:A
4 7duw:A 820 312 0.3785 0.1500 0.3942 1.86e-61 7duw:B
5 4v35:A 321 304 0.3231 0.3271 0.3454 4.14e-47
6 1umy:D 381 110 0.0862 0.0735 0.2545 0.18 1lt8:A, 1lt8:B, 4m3p:A, 4m3p:B, 4m3p:C, 4m3p:D, 1umy:A, 1umy:B, 1umy:C
7 5jxa:L 209 77 0.0738 0.1148 0.3117 0.90 6osy:7, 6osy:E, 6osy:O
8 7pua:DF 594 59 0.0615 0.0337 0.3390 1.0 6hiv:DF, 6hiw:DF, 6hiz:DF, 7pub:DF, 6sg9:DF, 6sgb:DF
9 5aa0:BZ 605 121 0.0892 0.0479 0.2397 1.6 5a9z:CA, 4zck:A, 4zcl:A, 4zcl:B, 4zcm:A, 4zcm:B
10 5a9y:A 562 121 0.0892 0.0516 0.2397 1.7 5a9x:A
11 7qep:L4 329 87 0.0708 0.0699 0.2644 5.9
12 7aor:ae 574 35 0.0369 0.0209 0.3429 8.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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