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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KEERFVIDTSIFTNTDVYILFGRTPTTALKNFLKLISKLKGTNFYMPPSIYEELMNFIDSDKIPKDLQIKIFQKPPKKHE
MEVPAFLLYELIEDVRHRIDKGLRVAEQAVRNVIADKEPETITNLRKKYRSALREGIIDSKEDVDLILLAKEMDGILVTA
DTGIMTWADKMGIRFVESRNLRGIINSLIKM

The query sequence (length=191) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7e8o:A 194 191 1.0000 0.9845 1.0000 3.78e-139 7e8o:B, 7e8o:C, 7e8o:D
2 8kd9:C 189 187 0.4188 0.4233 0.4278 6.49e-54 8kd9:E, 8kd9:G, 8kd9:H, 8kd9:D, 8kd9:F, 8kd9:J, 8kd9:I, 8kd9:A
3 8kda:E 189 187 0.4398 0.4444 0.4492 1.10e-51 8kda:G, 8kda:H, 8kda:F, 8kda:C, 8kda:D, 8kda:I, 8kda:J, 8kda:K, 8kda:A
4 2lcq:A 161 51 0.0890 0.1056 0.3333 1.0
5 2ogj:A 379 96 0.1309 0.0660 0.2604 3.4 2ogj:B, 2ogj:C, 2ogj:D, 2ogj:E, 2ogj:F
6 3wem:A 830 23 0.0576 0.0133 0.4783 4.8 3w37:A, 3wel:A, 3wen:A, 3weo:A
7 6hiv:Cb 252 25 0.0524 0.0397 0.4000 4.9 6hiw:Cb, 6hiy:Cb, 7pub:Cb, 6sga:Cb, 6sgb:Cb
8 7aor:p 242 27 0.0524 0.0413 0.3704 5.3
9 1bru:P 241 19 0.0419 0.0332 0.4211 6.1
10 6h57:A 795 43 0.0733 0.0176 0.3256 7.0
11 7d63:RZ 839 43 0.0733 0.0167 0.3256 7.4 7d4i:RZ, 7d5t:RZ, 7mqj:A
12 6n2n:A 572 22 0.0471 0.0157 0.4091 8.4 6n2n:C, 6n2o:A, 6n2o:C
13 7aju:JD 811 43 0.0733 0.0173 0.3256 8.6 6zqd:JD, 6zqe:JD, 6zqf:JD
14 6zqg:JD 829 43 0.0733 0.0169 0.3256 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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