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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KDYAKLANYDESKVPQYTLPSVLMCHDGEMVQTKEQWEQKRRPEILNLFTTYMFGKAPVLKHKLPCTVSRINEKALNGRA
TRKEITIQLTDDPQGPHIDLQLYLPNHVSGKIPVFLGISFMPNYTIYDDPDLSVPSFRGSMDKSWQLDKILEHGYGLATF
CYNDVDPDFDDDFQNGVHPYYYEKGQNFPDPDQWGSIAAWAWGMSRAMDYLETDKKVDAKKVAVIGHSRLGKTAVWAGAS
DPRFALVISGNSGCCGVAISRRCFGETVEAMNVRFPHWFCGNYKQFNDREKYLPFDQHELVALIAPRPIYIASAEEDNWS
DQKGEFLGGKGAEPVYALYGLGGIGCEEMPPVDTPYMNGPIAYHNRKGPHAVLPYDWEQFLRFADKYFK

The query sequence (length=389) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8qcl:A 390 389 0.9974 0.9949 0.9974 0.0 8qcl:B, 8qef:B
2 6syu:A 402 395 0.4550 0.4403 0.4481 1.16e-120 6grw:A, 6gs0:A, 6syr:A, 6syv:A, 6sz0:A, 6sz4:A, 6t0e:A, 6t0e:B, 6t0i:A
3 7b7h:A 370 377 0.4499 0.4730 0.4642 4.36e-119 6szo:A
4 8tru:A 378 341 0.2314 0.2381 0.2639 7.32e-24
5 4g4j:A 369 314 0.2159 0.2276 0.2675 1.99e-15
6 6ru1:B 386 383 0.2416 0.2435 0.2454 1.55e-14 6ru2:A, 6ru2:B, 6rv7:B, 6rv8:B, 6rv8:A, 6rv9:B
7 3f98:A 377 57 0.0463 0.0477 0.3158 0.61 3f97:A, 3f97:B, 3f98:B, 3f98:C, 3f9c:A, 3f9c:B, 5i8p:A, 5i8p:B, 5i9i:A, 5i9i:B, 5jad:A, 5jah:A, 5jal:A, 5jan:A, 5jao:A, 5jap:A, 5jar:A, 5jas:A, 5jat:A, 5jau:A, 5lp1:A, 5lyy:A, 5lz2:A, 5lz4:A, 5lz5:A, 5lz7:A, 5lz8:A, 5lz9:A, 6m06:A, 6m06:B, 6m07:A, 6m07:B, 6m08:B, 5ye7:B, 5ye7:A, 5ye8:B, 5ye8:A, 5ye9:A, 5ye9:B, 5yea:A, 5yea:B
8 7c4d:A 261 38 0.0437 0.0651 0.4474 0.62
9 1kyw:C 361 146 0.0900 0.0970 0.2397 1.4 1kyw:F, 1kyz:A, 1kyz:C, 1kyz:E
10 4dg9:A 575 87 0.0617 0.0417 0.2759 2.3 4dg8:A
11 1gwi:A 402 74 0.0566 0.0547 0.2973 2.6 1gwi:B
12 7zm7:A 711 54 0.0463 0.0253 0.3333 3.5 7zmb:A, 7zmg:A
13 8ian:A 270 54 0.0437 0.0630 0.3148 3.6 8ian:B
14 6aid:A 261 51 0.0386 0.0575 0.2941 5.0 3wyn:A, 3wyn:B
15 6jlu:W 51 14 0.0180 0.1373 0.5000 8.7 8j5k:W, 8j5k:w, 6jlu:w

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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