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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KDWTQYVNPLMGSQSTFELSTGNTYPAIARPWGMNFWTPQTGKMGDGWQYTYTANKIRGFKQTHQPSPWINDYGQFSIMP
IVGQPVFDEEKRASWFAHKGEVATPYYYKVYLAEHDIVTEMTPTERAVLFRFTFPENDHSYVVVDAFDKGSYIKIIPEEN
KIIGYTTRNSGGVPENFKNYFIIEFDKPFTYKATVENGNLQENVAEQTTDHAGAIIGFKTRKGEQVNARIASSFISFEQA
AANMNELGKDNIEQLAQKGKDAWNQVLGKIEVEGGNLDQYRTFYSCLYRSLLFPRKFYELDANGQPIHYSPYNGQVLPGY
MFTDTGFWDTFRCLFPLLNLMYPSVNKEMQEGLINTYLESGFFPEWASPGHRGCMVGNNSASILVDAYMKGVKVDDIKTL
YEGLIHGTENVHPEVSSTGRLGYEYYNKLGYVPYDVKINENAARTLEYAYDDWCIYRLAKELKRPKKEISLFAKRAMNYK
NLFDKESKLMRGRNEDGTFQSPFSPLKWGDAFTEGNSWHYTWSVFHDPQGLIDLMGGKEMFVTMMDSVFAVPPIFDDSYY
GQVIHEIREMTVMNMGNYAHGNQPIQHMIYLYDYAGQPWKAQYWLRQVMDRMYTPGPDGYCGDEDNGQTSAWYVFSALGF
YPVCPGTDEYVMGTPLFKKATLHFENGNSLVIDAPNNSTENFYIDSMSFNGADHTKNYLRHEDLFKGGTIKVDMSNRPNL
NRGTKEEDMPYSFSKELEHHHH

The query sequence (length=742) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2wvz:B 742 742 1.0000 1.0000 1.0000 0.0 2wvx:A, 2wvx:B, 2wvx:C, 2wvx:D, 2wvz:A, 2wvz:C, 2wvz:D, 2ww0:A, 2ww0:B, 2ww0:C, 2ww0:D, 2ww0:E, 2ww0:F, 2ww0:G, 2ww0:H, 2ww1:A, 2ww1:B, 2ww1:C, 2ww1:D, 2ww3:A, 2ww3:B, 2ww3:C, 2ww3:D, 2ww3:E, 2ww3:F, 2wzs:A, 2wzs:B, 2wzs:C, 2wzs:D, 2wzs:E, 2wzs:F, 2wzs:G, 2wzs:H
2 2ww2:B 737 736 0.5256 0.5292 0.5299 0.0
3 7nsn:A 1371 780 0.3922 0.2123 0.3731 8.34e-153 7nsn:B
4 6dwo:A 712 736 0.3194 0.3329 0.3220 4.68e-134 6dwo:B, 6dwo:C, 6dwo:D, 7fe1:A, 7fe1:B, 7fe1:C, 7fe1:D, 7fe2:A, 7fe2:B, 7fe2:C, 7fe2:D
5 7zgm:A 702 738 0.3356 0.3547 0.3374 1.09e-124
6 6f8z:A 715 736 0.3154 0.3273 0.3179 3.51e-121 6f8z:B, 6f8z:C, 6f90:A, 6f90:B, 6f90:C
7 6f92:A 760 771 0.3383 0.3303 0.3256 6.12e-117 6f91:A, 6f91:B, 6f91:C, 6f91:D, 6f91:E, 6f91:F, 6f91:G, 6f91:H, 6f92:B, 6f92:C, 6f92:D
8 5swi:B 693 725 0.3127 0.3348 0.3200 2.69e-114 5swi:A, 5swi:C, 5swi:D
9 4aq0:A 765 807 0.2372 0.2301 0.2181 8.68e-33 4aq0:B, 2xsg:A, 2xsg:B
10 7fe4:A 659 166 0.0580 0.0653 0.2590 0.013 7fe4:B, 7fe4:C, 8iuc:C, 8iuc:A, 8iuc:B
11 1bag:A 425 60 0.0216 0.0376 0.2667 3.3 3dc0:A, 1ua7:A
12 7m2w:A 453 101 0.0391 0.0640 0.2871 4.9 7m2w:B, 7m2w:C, 7m2w:D, 7m2x:A, 7m2x:B, 7m2y:A, 7m2y:B, 7m2z:B, 7m2z:A, 8qv2:a, 8qv2:b, 8qv2:c, 8qv2:d, 8qv2:e, 8qv2:f, 8qv2:g, 8qv2:h, 8qv2:i, 8qv2:j, 8qv2:k, 8qv2:l, 8qv2:m, 8qv2:n, 8qv3:c, 8qv3:d
13 8v31:C 251 163 0.0539 0.1594 0.2454 5.7 8v31:A
14 3bow:B 174 42 0.0202 0.0862 0.3571 8.8 1alv:A, 1alv:B, 1alw:A, 1alw:B, 5d69:A, 5d69:B, 3df0:B, 1dvi:A, 1dvi:B, 1np8:A, 1np8:B, 1nx0:A, 1nx0:B, 1nx1:A, 1nx1:B, 1nx2:A, 1nx3:A, 4phj:A, 4phj:B, 4phk:A, 4phk:B, 4phm:A, 4phm:B, 4phn:A, 4phn:B, 6qlb:A, 6qlb:B, 6qlb:C, 6qlb:D, 4wq2:A, 4wq2:B, 4wq3:A, 4wq3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218