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BioLiP
>protein
KDSLINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKK

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3fnv:B 68 65 0.9848 0.9559 1.0000 3.46e-44 3fnv:A, 4oo7:A, 4oo7:B, 4ooa:A, 4ooa:B, 4ooa:C, 4ooa:D, 4ooa:E, 4ooa:F, 7p0p:A, 7p0p:B, 7p0p:C, 7p0p:D
2 3ew0:A 77 64 0.6667 0.5714 0.6875 2.64e-29 6de9:A, 3ew0:B, 4ezf:A, 4ezf:B, 4f1e:A, 4f1e:B, 4f1e:C, 4f1e:D, 4f1e:E, 4f1e:F, 4f1e:G, 4f1e:H, 4f1e:I, 4f1e:J, 4f1e:K, 4f1e:L, 4f1e:M, 4f1e:N, 4f1e:O, 4f1e:P, 4f1e:Q, 4f1e:R, 4f28:A, 4f28:B, 4f2c:A, 4f2c:B, 3lpq:A, 3lpq:B, 7p0o:A, 7p0o:B, 2qd0:A, 2qd0:B, 2qh7:A, 2qh7:B, 2r13:A, 3ree:A
3 7yvz:A 63 60 0.5303 0.5556 0.5833 1.89e-21
4 3s2r:B 78 62 0.5455 0.4615 0.5806 1.68e-20 3s2q:A, 3s2q:B, 3s2r:A
5 3tbo:A 54 18 0.1515 0.1852 0.5556 0.19
6 3tbn:A 87 17 0.1667 0.1264 0.6471 0.22
7 3tbn:A 87 19 0.1515 0.1149 0.5263 4.3
8 3tbm:A 61 22 0.1667 0.1803 0.5000 0.39 3tbm:B
9 4ntc:A 325 44 0.1970 0.0400 0.2955 1.1 4ntc:B
10 8iu2:R 298 19 0.1515 0.0336 0.5263 1.1
11 4jn6:C 339 19 0.1364 0.0265 0.4737 1.4 4jn6:A
12 6avj:A 92 30 0.1818 0.1304 0.4000 2.6 6avj:B, 6avj:C
13 4ajw:A 765 33 0.1818 0.0157 0.3636 3.3 4v0i:A
14 5o83:A 794 33 0.1818 0.0151 0.3636 3.3 4ajw:B, 6dgt:A, 5is5:A, 7r2b:A, 4v0i:B
15 2wxl:A 823 33 0.1818 0.0146 0.3636 3.3 6gy0:A, 5i4u:A, 5i6u:A, 6mul:A, 6mul:B, 6mum:B, 5ngb:A, 7r26:A, 5t27:A, 5t28:A, 5t2b:A, 5t2d:A, 5t2g:A, 5t2i:A, 5t2m:A, 5t7f:A, 5t7f:B, 5t8i:A, 2wxf:A, 2wxh:A, 2wxi:A, 2wxj:A, 2wxm:A, 2wxn:A, 2wxo:A, 2wxp:A, 2wxq:A, 2x38:A, 4xe0:A
16 6pyu:A 930 33 0.1818 0.0129 0.3636 3.9 8bcy:A, 5dxu:A, 6ftn:A, 7jis:A, 5m6u:A, 6mum:A, 5ncy:A, 5ncz:A, 6ocu:A, 7oi4:AAA, 7oij:AAA, 7oil:AAA, 7ois:AAA, 8s3r:A, 5t2l:A, 5t8f:A, 5ubt:A, 2wxg:A, 2wxk:A
17 7lq1:A 950 33 0.1818 0.0126 0.3636 4.2 5ae8:A, 5ae9:A, 6eyz:A, 6ez6:A, 6g6w:A, 6hi1:A, 6hi2:A, 6hi9:A, 5l72:A, 7lm2:A, 6oco:A, 7pop:A, 7por:A, 7pos:A, 7pot:A, 6pyr:A, 6q6y:A, 6q73:A, 6q74:A, 6tnr:A, 6tns:A, 5vlr:A, 6zaa:A, 6zac:A, 6zad:A
18 8bn0:A 342 32 0.2121 0.0409 0.4375 7.4 8bai:A, 8bai:B, 8bai:C, 8bai:D, 8baz:A, 8baz:B, 8bb0:A, 8bb0:B, 8bmy:A, 8bmy:B, 8bmz:A, 8bmz:B
19 2jks:A 284 31 0.1667 0.0387 0.3548 7.8
20 6z1p:AV 129 37 0.2121 0.1085 0.3784 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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