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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KDRVTVQEREAEALKQKELEQEAKRMAEERRKYTLKIVEEETKKELEENKRENDEEEYEAWKVRELKRIKRDREDREALE
KEKAEIERMRNLTEEERRAELRANGKVITNKAVKGKYKFLQKYYHRGAFFMDEDEEVYKRDFSAPTLEDHFNKTILPKVM
QVKNFGRSGRTKYTHLVDQDTTSFDSAW

The query sequence (length=188) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8qo9:K 212 180 0.9468 0.8396 0.9889 1.84e-124 7aav:K, 7abf:K, 7abg:K, 7abi:K, 8h6k:4K, 8q7n:K
2 8swq:B 278 23 0.0585 0.0396 0.4783 1.6 8swp:B, 8swq:E, 8swr:B, 8sws:B
3 8swq:A 302 23 0.0585 0.0364 0.4783 1.8 5ifk:A, 5ifk:B, 5ifk:C, 8swp:A, 8swp:D, 8swp:E, 8swq:D, 8swr:A, 8swr:D, 8sws:A, 8sws:D, 8sws:E
4 5u8t:2 583 52 0.0798 0.0257 0.2885 6.2
5 7n4y:B 2455 48 0.0851 0.0065 0.3333 6.4 7n4y:A
6 7d3e:C 1380 42 0.0851 0.0116 0.3810 7.3 7d3e:A, 7d3f:C, 7d3f:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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