Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRVEVKKFVKIGRPGYKVTKQRDSELFQIDYPEIAEGI
MPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQ

The query sequence (length=144) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8i0r:v 173 153 0.9028 0.7514 0.8497 1.32e-90 7abg:F, 7abh:F, 6ff4:7, 6ff7:7, 8i0p:v, 8i0t:v, 7q4o:1, 7q4p:1, 8qo9:G, 6qx9:A2, 8qxd:8, 8r0a:8, 8r0b:8, 8rm5:8, 7vpx:B
2 8ch6:I 185 145 0.8611 0.6703 0.8552 9.47e-83 7abi:F, 7onb:M, 7qtt:I, 5z56:v, 5z57:v
3 7dco:v 207 160 0.3333 0.2319 0.3000 5.59e-13 5gm6:I, 5zwm:v, 5zwo:v
4 5nrl:U 196 180 0.3472 0.2551 0.2778 4.21e-11
5 6g90:U 196 180 0.3333 0.2449 0.2667 2.87e-10 7oqb:U, 7oqe:U
6 8qzs:r 114 42 0.0972 0.1228 0.3333 0.004 7abf:N, 7abg:N, 7abi:N, 8h6k:4N, 5o9z:N, 8q7n:r, 8qpe:r
7 6edw:C 724 31 0.0972 0.0193 0.4516 1.9 6ee1:A, 6ee1:C
8 6edw:B 746 31 0.0972 0.0188 0.4516 2.0 6edw:A, 6edw:D, 6edz:A, 6edz:B, 6edz:D, 6ee1:B, 6ee1:D
9 6edz:C 723 31 0.0972 0.0194 0.4516 2.0
10 8idf:A 459 28 0.0764 0.0240 0.3929 5.0
11 1zu1:A 127 36 0.0764 0.0866 0.3056 5.1
12 5nmx:D 409 116 0.1944 0.0685 0.2414 6.4 5nmw:A, 5nmw:B, 5nmw:C, 5nmw:D, 5nmx:A, 5nmx:B, 5nmx:C
13 1xed:A 111 39 0.0833 0.1081 0.3077 6.8 1xed:B
14 8q7n:X 81 32 0.0764 0.1358 0.3438 7.8 8h6k:4I, 8h6l:4I, 8qo9:X, 8qpe:X, 8qzs:X
15 6iw6:A 438 35 0.0903 0.0297 0.3714 9.9 6iw6:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218