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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KDKLNPPTPSIYLENKRDAFFPPLHQFCTNPKNPVTVIRGLAGALKLDLGLFSTKTLVEANNEHMVEVRTQLLQPADENW
DPTGTKKIWRCESNRSHTTIAKYAQYQASSFQESLREENEKGPFKTIKFGTNIDLSDNKKWKLQLHELTKLPAFARVVSA
GNLLTHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEDYWGVLNDFCEKNNLNFLMSSWWP
NLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAVGWCNNIAWNVGPLTACQYKLAVERYEWNKLKSVKSPVPMVHLSW
NMARNIKVSDPKLFEMIKYCLLKILKQYQTLREALVAAGKEVIWHGRTNDEPAHYCSICEVEVFNLLFVTNESNTQKTYI
VHCHDCARKTSKSLENFVVLEQYKMEDLIQVYDQFTLALSLSS

The query sequence (length=443) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ful:A 478 438 0.9255 0.8577 0.9361 0.0 5a1l:A, 5a1l:B, 3avr:A, 3avs:A, 6fuk:A, 5fxv:A, 5fxv:B, 5fxw:A, 5fxw:B, 5fxx:A, 5fxx:B, 5fxz:A, 5fxz:B, 5fy0:A, 5fy0:B, 5fy1:A, 5fy1:B, 5fy7:A, 5fy7:B, 5fym:A, 5fym:B, 6g8f:A, 4uf0:A, 4uf0:B, 3zli:A, 3zli:B, 3zpo:A, 3zpo:B
2 4eyu:A 456 439 0.7088 0.6886 0.7153 0.0 4ask:A, 4ask:B, 4eyu:B, 4ez4:A, 4ez4:B, 4ezh:A, 4ezh:B, 6f6d:A, 5fp3:A, 5fp3:B, 5oy3:A, 2xue:A, 2xue:B, 2xxz:A, 2xxz:B
3 5v9t:B 593 315 0.1716 0.1282 0.2413 0.030 5ceh:A, 5k4l:B, 5k4l:A, 5v9p:A, 5v9t:A
4 5yko:A 487 179 0.1038 0.0945 0.2570 0.20 5ykn:A
5 6ip0:A 472 207 0.0971 0.0911 0.2077 0.59 6ip4:A
6 4bu2:A 379 21 0.0226 0.0264 0.4762 1.7
7 4bxf:A 425 21 0.0226 0.0235 0.4762 1.9 4bxf:B
8 4b5g:A 259 78 0.0451 0.0772 0.2564 4.4 4b5f:A, 4b5g:B, 4b5g:C, 4b5h:A, 4b5i:A, 4b5j:A, 4b5m:A, 4b5m:B, 4b5m:C, 2jc5:A
9 4xt0:A 243 49 0.0406 0.0741 0.3673 4.6
10 3e15:D 295 74 0.0429 0.0644 0.2568 7.1
11 8ci0:AAA 666 22 0.0271 0.0180 0.5455 7.8 8ci0:BBB, 8ci0:CCC, 1itz:A, 1itz:B, 1itz:C
12 5hje:A 676 22 0.0226 0.0148 0.4545 7.8 5hyv:A, 5i51:A, 5i5e:A, 5i5g:A, 5xps:A, 5xqa:A, 5xqk:A, 5xrv:A, 5xry:A, 5xs6:A, 5xsa:A, 5xsb:A, 5xsm:A, 5xt0:A, 5xt4:A, 5xtl:A, 5xtv:A, 5xtx:A, 5xu2:A, 5xu9:A, 5xuf:A, 5xvt:A
13 7tg5:A 285 61 0.0429 0.0667 0.3115 8.1 7te5:A, 7te5:B, 7tfq:A, 7tg5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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