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BioLiP
>protein
KDFIINEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARK

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5me0:Y 76 76 1.0000 1.0000 1.0000 2.25e-50 5me1:Y
2 5lmn:X 168 76 0.5921 0.2679 0.5921 1.75e-27 5lmo:X, 5lmp:X, 5lmq:X, 5lmr:X, 5lms:X, 5lmt:X, 5lmu:X, 5lmv:X
3 8jsg:A 167 61 0.5000 0.2275 0.6230 8.68e-21 8jsh:A, 5me0:Z, 5me1:Z
4 3tnj:A 130 56 0.1842 0.1077 0.2500 2.3
5 1yum:A 212 43 0.1711 0.0613 0.3023 3.0 1yum:B, 1yum:C, 1yum:D, 1yun:A, 1yun:B
6 4v8l:D 2822 31 0.1579 0.0043 0.3871 5.3 4ce4:o, 6hiv:US, 6hiv:UT, 6hiw:US, 6hiw:UT, 6hiy:US, 6hiy:UT, 4v8l:E, 4v8l:F, 4v8l:A, 4v8l:B, 4v8l:C, 4v8v:A, 4v8v:B, 4v8v:C, 4v8v:D, 4v8v:E, 4v8v:F, 4v8w:D, 4v8w:E, 4v8w:F, 4v8w:A, 4v8w:B, 4v8w:C
7 2eer:B 347 29 0.1447 0.0317 0.3793 6.0 2eer:A
8 6eoa:A 193 38 0.1711 0.0674 0.3421 6.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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