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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKVYFK
GQCLEEWFFEFGFVIPNSTNTWQSLIEAMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV

The query sequence (length=141) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5nal:B 150 147 1.0000 0.9400 0.9592 5.57e-101 5e80:B, 5e80:A, 5e8f:A, 5e8f:C, 5f2u:A, 5f2u:B, 4jv6:B, 4jv8:B, 4jvb:B, 4jvf:B, 5ml2:B, 5ml3:B, 5ml4:B, 5ml6:B, 5ml8:B, 7pad:B, 7pae:B, 7q9q:BBB, 7q9r:BBB, 7q9s:AAA, 7q9s:BBB, 7q9u:DDD, 7q9u:CCC, 7qf9:AAA, 7qf9:BBB, 7qjk:BBB, 7qjk:AAA, 7qjk:CCC, 7qjk:DDD, 3t5g:B, 3t5i:D, 3t5i:A, 3t5i:B, 3t5i:C, 5tar:B, 5tb5:B, 5tb5:D, 5x72:A, 5x73:A, 5x74:A, 5yav:B, 5yaw:B
2 7ok6:AAA 170 94 0.1986 0.1647 0.2979 4.39e-07 7ok6:HHH
3 7umo:A 169 106 0.1986 0.1657 0.2642 6.01e-07 6h6a:D, 6h6a:G, 6h6a:J, 5l7k:A, 3rbq:A, 3rbq:B, 3rbq:C, 3rbq:D, 3rbq:E, 3rbq:F, 7umo:B, 7umo:C, 7umo:D, 7umo:E, 7umo:F
4 7jro:b 239 46 0.1277 0.0753 0.3913 1.1 7jrp:b
5 8jv1:A 360 60 0.1064 0.0417 0.2500 3.7 8jv2:A, 8jv4:A
6 2is4:B 632 147 0.2270 0.0506 0.2177 4.2
7 2is6:A 654 147 0.2270 0.0489 0.2177 4.3 2is1:A, 2is1:B, 2is2:A, 2is2:B, 2is4:A, 2is6:B
8 5pal:A 109 32 0.0780 0.1009 0.3438 5.2 5zgm:A, 5zgm:B
9 8gy2:A 723 27 0.0922 0.0180 0.4815 6.0
10 8vk4:D 4379 53 0.1348 0.0043 0.3585 6.8 8vjj:A, 8vjj:D, 8vjj:B, 8vjj:C, 8vjk:A, 8vjk:B, 8vjk:C, 8vjk:D, 8vk3:A, 8vk3:D, 8vk3:B, 8vk3:C, 8vk4:A, 8vk4:B, 8vk4:C
11 6bfn:A 301 40 0.0922 0.0432 0.3250 6.9 6bfn:B
12 4zm4:D 387 23 0.0780 0.0284 0.4783 7.5
13 2oys:A 230 25 0.0709 0.0435 0.4000 9.6 2oys:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218