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BioLiP
>protein
KDDQVFEAVGTTDELSSAIGFALELVTEKGHTFAEELQKIQCTLQDVGSALATYTTFKAGPILELEQWIDKYTSQLPPLT
AFILPSGGKISSALHFCRAVCCRAERRVVPLVQMGETDANVAKFLNRLSDYLFTLARYAAMKEGNQEKIYMK

The query sequence (length=152) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7rut:E 187 156 0.9934 0.8075 0.9679 7.78e-109 6d5k:A, 6d5k:C, 6d5k:B, 6d5x:A, 6d5x:C, 6d5x:B, 2idx:A, 2idx:C, 2idx:B, 7rut:D, 7rut:C, 7rut:F, 7rut:B, 7rut:A, 7ruu:A, 7ruu:C, 7ruu:B, 7ruu:D, 7ruv:A, 7ruv:D, 7ruv:B, 7ruv:C
2 3ci1:A 188 158 0.4013 0.3245 0.3861 1.65e-30 3ci3:A, 3ci4:A, 3gah:A, 3gai:A, 3gaj:A, 2nt8:A, 2r6t:A, 2r6t:B, 2r6x:A, 2r6x:B
3 3ke5:A 182 145 0.3882 0.3242 0.4069 6.53e-26 3ke5:C, 3ke5:B
4 2zhz:B 174 153 0.3684 0.3218 0.3660 8.52e-25 2zhz:A, 2zhz:C
5 8d32:A 186 114 0.3092 0.2527 0.4123 4.76e-16 6wgs:A, 6wgv:A, 6wh5:A, 6wh5:B, 6wh5:C
6 8h0s:C 190 131 0.2171 0.1737 0.2519 0.76 8h0s:A, 8h0t:A, 4poo:A
7 8h0s:B 171 76 0.1447 0.1287 0.2895 2.0 8h0s:D, 4poo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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