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BioLiP
>protein
KDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVSGQPQQLLQVLQQTLPPPVFQMLLTKL

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1om2:A 95 66 0.9848 0.6842 0.9848 4.55e-41 3awr:A, 3ax2:A, 3ax2:C, 3ax5:C, 2v1s:D, 2v1s:E, 2v1t:A
2 5az7:A 434 66 0.9697 0.1475 0.9697 8.90e-37 3awr:B, 3ax2:E, 3ax2:G, 3ax3:A, 3ax3:G, 3ax3:C, 3ax3:E, 3ax5:A, 5az6:B, 5az6:A, 5az8:A, 2v1s:A, 2v1s:B, 2v1s:C, 2v1s:F, 2v1t:B
3 7d5c:A 919 53 0.1970 0.0141 0.2453 0.71
4 2jie:A 445 53 0.3030 0.0449 0.3774 1.1 2o9r:A, 2o9t:A, 2z1s:A
5 6hiy:DA 1426 57 0.2273 0.0105 0.2632 1.2
6 6hiv:DA 1557 57 0.2273 0.0096 0.2632 1.2 6hiw:DA, 7pub:DA
7 6bvv:A 416 49 0.2121 0.0337 0.2857 1.8 6bw9:A, 6bwa:A, 6bwb:A, 8fub:A, 8fzm:A, 8fzm:C, 8hkw:A, 8hkw:B, 7jjl:A, 7lf4:A, 7lf4:C, 7lfc:A, 7rfy:A, 7rg5:A, 5xzx:A
8 8a0m:D 975 35 0.1515 0.0103 0.2857 1.9
9 8a0m:B 964 35 0.1515 0.0104 0.2857 1.9
10 8a0c:A 1116 35 0.1515 0.0090 0.2857 2.0 8a0c:B, 8a0m:A, 8a0m:C
11 4qfl:A 507 26 0.1818 0.0237 0.4615 4.5 4qfl:B, 4qfn:A, 4qfn:B, 4qfo:A, 4qfo:B, 4qfp:A, 4qfp:B
12 4u7i:A 93 48 0.2121 0.1505 0.2917 5.2
13 1f3t:B 381 57 0.2576 0.0446 0.2982 5.8 1f3t:A, 1f3t:C, 1f3t:D, 1njj:A, 1njj:B, 1njj:C, 1njj:D, 1qu4:A, 1qu4:B, 1qu4:C, 1qu4:D, 1szr:C, 1szr:D, 1szr:A, 1szr:B, 2tod:A, 2tod:B, 2tod:C, 2tod:D
14 7dnp:A 174 34 0.1667 0.0632 0.3235 7.2
15 1cjx:A 352 27 0.1667 0.0312 0.4074 8.9 1cjx:D, 1cjx:B, 1cjx:C, 7x8e:A, 7x8e:B, 7x8e:C, 7x8e:D, 7x8e:E, 7x8e:F, 7x8e:G, 7x8e:H, 7xnt:G, 7xnt:A, 7xnt:B
16 8jal:B 573 27 0.1818 0.0209 0.4444 9.1 8jal:A, 8jaq:A, 8jaq:B, 8jaq:J, 8jaq:K, 8jar:A, 8jar:B, 8jas:A, 8jas:B, 8jas:K, 8jas:J, 8jau:A, 8jau:B, 8jav:A, 8jav:B, 8jav:J, 8jav:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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