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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKL

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1om2:A 95 66 1.0000 0.6947 1.0000 2.38e-42 3awr:A, 3ax2:A, 3ax2:C, 3ax5:C, 2v1s:D, 2v1s:E, 2v1t:A
2 5az7:A 434 66 0.9545 0.1452 0.9545 2.66e-26 3awr:B, 3ax2:E, 3ax2:G, 3ax3:A, 3ax3:G, 3ax3:C, 3ax3:E, 3ax5:A, 5az6:B, 5az6:A, 5az8:A, 2v1s:A, 2v1s:B, 2v1s:C, 2v1s:F, 2v1t:B
3 7d5c:A 919 53 0.1970 0.0141 0.2453 1.1
4 8a0m:B 964 35 0.1515 0.0104 0.2857 1.5
5 8a0m:D 975 35 0.1515 0.0103 0.2857 1.5
6 8a0c:A 1116 35 0.1515 0.0090 0.2857 1.6 8a0c:B, 8a0m:A, 8a0m:C
7 6hiv:DA 1557 57 0.2273 0.0096 0.2632 1.9 6hiw:DA, 7pub:DA
8 6hiy:DA 1426 57 0.2273 0.0105 0.2632 2.0
9 4b3g:A 614 54 0.2273 0.0244 0.2778 5.2 4b3g:B
10 2jie:A 445 53 0.2879 0.0427 0.3585 5.6 2o9r:A, 2o9t:A, 2z1s:A
11 4pak:A 304 52 0.2121 0.0461 0.2692 8.2 4p9k:A
12 8jal:B 573 27 0.1818 0.0209 0.4444 8.9 8jal:A, 8jaq:A, 8jaq:B, 8jaq:J, 8jaq:K, 8jar:A, 8jar:B, 8jas:A, 8jas:B, 8jas:K, 8jas:J, 8jau:A, 8jau:B, 8jav:A, 8jav:B, 8jav:J, 8jav:K
13 6hxq:B 410 24 0.1364 0.0220 0.3750 9.2
14 7dnp:A 174 34 0.1667 0.0632 0.3235 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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