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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQ
KLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR

The query sequence (length=124) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ont:D 126 124 1.0000 0.9841 1.0000 2.15e-91 4ont:F, 4ont:E, 4zh1:D, 4zh1:E, 4zh1:F
2 4a5w:B 871 117 0.2742 0.0390 0.2906 0.049
3 4e0s:B 898 117 0.2742 0.0379 0.2906 0.050 7nyc:B, 7nyd:B
4 3t5o:A 871 117 0.2742 0.0390 0.2906 0.054
5 2uwn:A 187 103 0.2097 0.1390 0.2524 0.073 2v8e:A, 7zjm:B
6 2uwn:A 187 53 0.1452 0.0963 0.3396 4.0 2v8e:A, 7zjm:B
7 7aoe:B 1174 80 0.1694 0.0179 0.2625 0.24 7aoc:B, 7aod:B, 7aod:N
8 8am6:AAA 547 44 0.1371 0.0311 0.3864 0.25 8am3:AAA, 8am3:BBB, 8am6:BaB, 8am8:BBB, 8am8:AAA
9 7mwz:D 301 56 0.1452 0.0598 0.3214 0.26
10 4wqm:A 326 59 0.1532 0.0583 0.3220 0.47
11 2xwb:F 714 115 0.2742 0.0476 0.2957 1.8 3hrz:D, 3hs0:D, 3hs0:I, 7jtn:A, 7jtn:C, 7jtq:A, 7jtq:C, 7noz:F, 2ok5:A, 1q0p:A, 6qsw:AAA, 6qsw:BBB, 6qsw:CCC, 6qsx:AAA, 6qsx:BBB, 6rav:AAA, 6rav:BBB, 1rrk:A, 1rs0:A, 1rtk:A, 6rur:L, 6rur:J, 6ruv:J, 6ruv:L, 6t8u:AAA, 6t8u:BBB, 6t8u:CCC, 6t8v:AAA, 6t8v:BBB, 6t8w:AAA, 6t8w:BBB, 2win:I, 2win:J, 2win:K, 2win:L, 2xwb:H
12 7aih:U 92 65 0.1694 0.2283 0.3231 1.9 7ane:U
13 1ckl:A 126 26 0.0887 0.0873 0.4231 2.3 1ckl:B, 1ckl:D, 1ckl:E, 1ckl:F, 2o39:C, 2o39:D
14 7rzw:B 864 33 0.0887 0.0127 0.3333 2.3 7rzw:A
15 3mse:B 168 33 0.0887 0.0655 0.3333 4.0
16 6yxx:E9 200 54 0.1532 0.0950 0.3519 4.6
17 2jrp:A 81 27 0.0887 0.1358 0.4074 4.9
18 6nbe:N 186 40 0.0968 0.0645 0.3000 6.0 6nas:N, 6nbw:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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