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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KCEQPRWASKDPAAGKASTPDEKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPLPPAYGRDAVEQTLAGLFKVMSIDAV
CVFHICSCKGLVFTERVDVLRALPTGKSYNLSILGVFQLTDGKITGWRDYFDLREFEEAVDLPLRGK

The query sequence (length=147) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4r9k:C 160 146 0.9592 0.8812 0.9658 3.85e-103 5jpu:A, 5jpu:B, 4r9k:A, 4r9k:B, 4r9l:A, 4r9l:B
2 5ck6:A 154 146 0.8980 0.8571 0.9041 2.13e-97 5ck6:B, 5clk:A, 5clk:B, 5gkw:A, 1nu3:A, 1nu3:B, 1nww:A, 4xbt:A, 4xbt:C, 4xby:D, 4xby:B, 4xdv:C, 4xdv:D, 4xdv:A, 4xdv:B, 7xee:A, 7xee:B, 7xef:A, 7xef:B, 7xef:C, 7xef:D, 5yao:A, 5yng:A, 5yng:B, 5yqt:D
3 5aih:A 125 124 0.2857 0.3360 0.3387 1.97e-15 5aih:B, 5aii:F
4 5aig:A 124 120 0.2449 0.2903 0.3000 1.61e-12 5aig:B
5 2bng:B 133 116 0.2245 0.2481 0.2845 2.83e-07
6 5hgr:A 315 44 0.1088 0.0508 0.3636 0.095 5hgr:B
7 7qd1:A 311 44 0.1156 0.0547 0.3864 0.12 7qcz:A, 7qd0:A, 7qd1:C, 7qd2:A, 7qd2:C
8 6pq1:A 320 44 0.1156 0.0531 0.3864 0.17
9 5ui2:A 316 38 0.1088 0.0506 0.4211 0.24 5ui2:B
10 4plf:B 330 51 0.1088 0.0485 0.3137 0.29 4plc:A, 4plc:B, 4plc:C, 4plc:D, 4plf:A, 4plg:A, 4plg:B, 6vdj:A
11 1guz:A 305 36 0.0952 0.0459 0.3889 0.50 1guz:B, 1guz:C, 1guz:D
12 1gv0:A 301 36 0.0952 0.0465 0.3889 0.59 1gv0:B
13 7ekr:B 309 40 0.1156 0.0550 0.4250 0.62 7ekr:A
14 2a92:C 318 37 0.0884 0.0409 0.3514 0.87 2a92:A, 2a92:B, 2a92:D, 2a94:A, 2aa3:A, 2aa3:B, 2aa3:C, 2aa3:D, 4b7u:A, 5hru:A, 5hru:B, 5hto:A, 5hto:B, 5hto:D, 5hto:E, 1oc4:A, 1oc4:B, 4plz:A, 1t24:A, 1t25:A, 1t26:A, 1t2c:A, 1t2d:A, 6txr:A, 6txr:B, 6txr:C, 6txr:D, 3zh2:A, 3zh2:B, 3zh2:C, 3zh2:D
15 7zsg:1 314 40 0.1088 0.0510 0.4000 1.1 3mg1:A, 3mg1:B, 3mg2:A, 3mg2:B, 3mg3:A, 3mg3:B, 7sc9:BH, 7sc9:CQ, 7sc9:DI, 7sc9:EA, 7scb:BH, 7scc:AS, 7scc:BP, 6t6k:A, 6t6m:A, 6t6o:A, 8to2:B, 8tpj:B, 5tuw:A, 5tuw:B, 5tuw:C, 5tuw:D, 5tuw:E, 5tuw:F, 5tux:A, 5tv0:A, 4xb4:A, 4xb4:B, 4xb5:A, 7zsf:A, 7zsh:1, 7zsi:1, 7zsj:1, 7zxv:A
16 1bag:A 425 30 0.0816 0.0282 0.4000 1.3 3dc0:A, 1ua7:A
17 4plt:B 319 51 0.0952 0.0439 0.2745 2.7 4plh:A, 4plh:B, 4plh:C, 4plh:D, 4plt:A, 4plt:C, 4plt:D, 4plv:A, 4plv:B, 4plv:C, 4plv:D, 4plw:A, 4plw:B, 4plw:C, 4plw:D, 4ply:B, 4ply:A, 4ply:C, 4ply:D, 4ply:F, 4ply:E, 4ply:G, 4ply:H
18 3aw9:A 304 88 0.1905 0.0921 0.3182 3.3 3aw9:B, 3aw9:C, 3icp:A, 3ko8:A
19 6z96:A 155 120 0.1973 0.1871 0.2417 4.0 6z92:A, 6z92:B, 6z93:A, 6z93:B, 6z94:A, 6z94:B, 6z96:B, 6zw9:A, 6zw9:B
20 8c6j:S 635 49 0.1156 0.0268 0.3469 9.2 7abi:O, 8ch6:X, 6ff4:O, 8i0r:J, 8i0s:J, 8i0t:J, 5mqf:O, 7qtt:X, 6zym:O

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218