Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KCDVYLWGAGRHGQLAEAGRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTVLACGEGSYGRLGQGNSDDLHVLTVISA
LQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKL
FTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDV
LCGIGIKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAW
GSNSEGQLGLGHTNHVREPTLVTGLQGKNVRQISAGRCHSAAWTA

The query sequence (length=365) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4o2w:A 365 365 1.0000 1.0000 1.0000 0.0 4o2w:B, 4o2w:D
2 7q41:A 369 370 0.4274 0.4228 0.4216 5.38e-86 7q41:C, 7q41:E, 7q42:C, 7q42:A, 7q42:E, 7q43:A, 7q43:C, 7q43:E, 7q44:C, 7q44:A, 7q44:E, 7q45:A, 7q45:C, 7q45:E, 7q46:C, 7q46:E, 7q46:A
3 7q41:A 369 156 0.1233 0.1220 0.2885 2.63e-17 7q41:C, 7q41:E, 7q42:C, 7q42:A, 7q42:E, 7q43:A, 7q43:C, 7q43:E, 7q44:C, 7q44:A, 7q44:E, 7q45:A, 7q45:C, 7q45:E, 7q46:C, 7q46:E, 7q46:A
4 7q41:A 369 160 0.1397 0.1382 0.3187 5.52e-14 7q41:C, 7q41:E, 7q42:C, 7q42:A, 7q42:E, 7q43:A, 7q43:C, 7q43:E, 7q44:C, 7q44:A, 7q44:E, 7q45:A, 7q45:C, 7q45:E, 7q46:C, 7q46:E, 7q46:A
5 4nbm:C 369 327 0.3178 0.3144 0.3547 5.60e-62 4nbm:D, 4nc4:A, 4nc4:C
6 4nbm:C 369 343 0.3288 0.3252 0.3499 5.52e-60 4nbm:D, 4nc4:A, 4nc4:C
7 4nbm:C 369 278 0.2795 0.2764 0.3669 4.77e-49 4nbm:D, 4nc4:A, 4nc4:C
8 4nbm:C 369 295 0.2329 0.2304 0.2881 4.72e-41 4nbm:D, 4nc4:A, 4nc4:C
9 4nbm:C 369 224 0.2247 0.2222 0.3661 9.10e-41 4nbm:D, 4nc4:A, 4nc4:C
10 3mvd:L 394 322 0.2466 0.2284 0.2795 4.32e-14 3mvd:K
11 3mvd:L 394 381 0.2603 0.2411 0.2493 3.32e-13 3mvd:K
12 3mvd:L 394 277 0.2110 0.1954 0.2780 1.96e-10 3mvd:K
13 4d4o:A 414 200 0.1452 0.1280 0.2650 1.24e-09 4d4o:C, 4d4p:A, 4d4p:C, 4d4p:G, 4d4p:H, 4x33:A, 4x33:B, 1yop:A, 1yws:A
14 4d4o:A 414 211 0.1452 0.1280 0.2512 2.53e-07 4d4o:C, 4d4p:A, 4d4p:C, 4d4p:G, 4d4p:H, 4x33:A, 4x33:B, 1yop:A, 1yws:A
15 4d4o:A 414 49 0.0630 0.0556 0.4694 0.013 4d4o:C, 4d4p:A, 4d4p:C, 4d4p:G, 4d4p:H, 4x33:A, 4x33:B, 1yop:A, 1yws:A
16 5j14:A 450 43 0.0411 0.0333 0.3488 0.73 5j14:B, 5j7z:A
17 1szn:A 417 157 0.0986 0.0863 0.2293 0.98 1t0o:A
18 1jtd:B 273 180 0.1315 0.1758 0.2667 2.3
19 1jtd:B 273 212 0.1342 0.1795 0.2311 6.0
20 8hku:L15P 94 60 0.0548 0.2128 0.3333 7.4 8hkv:L15P, 8hky:L15P, 8hkz:L15P, 8hl1:L15P, 8hl2:L15P, 8hl3:L15P, 8hl4:L15P, 8hl5:L15P

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218