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BioLiP
>protein
KAVSLGTSKINYIDPRIICSWAKAQDVPINKIFSATIQKKFPWAMNAENFDF

The query sequence (length=52) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2b9s:B 52 52 1.0000 1.0000 1.0000 1.59e-33
2 1sc7:A 567 52 0.4808 0.0441 0.4808 8.75e-13 1a31:A, 1a36:A, 1ej9:A, 1k4t:A, 1lpq:A, 1nh3:A, 1r49:A, 1rrj:A, 1seu:A, 1t8i:A, 1tl8:A
3 1rr8:C 494 52 0.4808 0.0506 0.4808 1.07e-12 1a35:A, 1k4s:A
4 4n20:A 639 23 0.1923 0.0156 0.4348 2.0 4n25:A, 4n2d:A, 4n2f:A, 4n2h:A, 4n2k:A
5 4n2i:A 662 23 0.1923 0.0151 0.4348 2.2 4n22:A, 4n24:A, 4n26:A, 4n28:A, 4n2a:A, 4n2b:A, 4n2c:A, 4n2e:A, 4n2g:A, 4n2l:A, 4n2m:A, 4n2n:A
6 3j16:A 386 32 0.1923 0.0259 0.3125 2.6 5m1j:A1
7 3i4k:A 370 34 0.1731 0.0243 0.2647 3.4 3i4k:B, 3i4k:C, 3i4k:D, 3i4k:E, 3i4k:F, 3i4k:G, 3i4k:H
8 3q94:A 285 11 0.1923 0.0351 0.9091 4.1 3q94:B
9 4jv3:A 407 38 0.3077 0.0393 0.4211 4.2 3mqd:A, 3u0e:A, 3u0f:A
10 3c9f:B 540 49 0.2692 0.0259 0.2857 5.1 3c9f:A
11 1e1c:A 727 24 0.1154 0.0083 0.2500 5.3 1e1c:C, 1req:A, 1req:C, 2req:A, 2req:C, 3req:A, 4req:A, 4req:C, 5req:A, 5req:C, 6req:A, 6req:C, 7req:A, 7req:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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