Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KASHIRIANRKRVEMFVAKRFHLPTRLATAAPDIAAEWHDELNPMHMYPAIIGIGHVQPVWWKCAICSHSYQMSVEKRVV
RGGGCPQCVVNGKRAV

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6sga:Fd 96 96 1.0000 1.0000 1.0000 4.45e-69 7pua:Fd, 6sgb:Fd
2 6yxx:E2 369 64 0.2292 0.0596 0.3438 2.75e-04
3 6yxx:E2 369 82 0.2083 0.0542 0.2439 1.3
4 8gyj:B 428 53 0.1979 0.0444 0.3585 0.050 8gyi:A, 8gyi:B, 8gyj:A
5 7aor:at 242 29 0.1250 0.0496 0.4138 0.11
6 7aor:at 242 72 0.1979 0.0785 0.2639 0.30
7 7ane:at 204 29 0.1146 0.0539 0.3793 0.16
8 7pub:DS 243 29 0.1146 0.0453 0.3793 0.24 6hiv:DS, 6hiw:DS, 6hiy:DS
9 1gn9:A 543 29 0.1146 0.0203 0.3793 1.9 1gn9:B, 1gnl:A, 1gnl:B, 1oa0:A, 1oa0:B, 1upx:A, 1upx:B
10 7qh2:C 467 80 0.2396 0.0493 0.2875 2.4 7qh2:F
11 1v2a:B 209 29 0.1250 0.0574 0.4138 3.8 1v2a:A, 1v2a:C, 1v2a:D
12 5xyi:K 90 48 0.1562 0.1667 0.3125 4.2
13 1lbg:A 357 28 0.1042 0.0280 0.3571 4.6 2bjc:A, 2bjc:B, 1cjg:A, 1cjg:B, 1efa:A, 1efa:B, 1efa:C, 1jwl:B, 1jwl:A, 1jwl:C, 2kei:A, 2kei:B, 2kej:A, 2kej:B, 2kek:A, 2kek:B, 1l1m:A, 1l1m:B, 1lbg:D, 1lbh:A, 1lbh:B, 1lbh:C, 1lbh:D, 1lcc:A, 1lcd:A, 1osl:A, 1osl:B, 2p9h:A, 2p9h:B, 2paf:A, 2paf:B, 2pe5:A, 2pe5:B, 2pe5:C, 4rzt:A, 4rzt:B, 4rzt:C, 4rzt:D, 1tlf:A, 1tlf:B, 1tlf:C, 1tlf:D
14 4iz9:A 381 36 0.1562 0.0394 0.4167 6.1
15 6iq5:A 459 17 0.0938 0.0196 0.5294 6.2 3pm0:A
16 7w1y:4 653 36 0.0833 0.0123 0.2222 6.6 7w1y:C, 6xtx:4, 6xty:4
17 6oyu:B 459 17 0.0938 0.0196 0.5294 6.6 6oyu:A, 6oyv:A, 6oyv:B
18 8b9d:4 677 36 0.0833 0.0118 0.2222 6.7 7pfo:4, 7plo:4
19 6iq5:B 437 17 0.0938 0.0206 0.5294 6.8
20 8i9p:Ce 194 46 0.1146 0.0567 0.2391 7.3 8i9r:Ce, 8i9t:Ce, 8i9v:Ce
21 6mpx:A 673 50 0.1458 0.0208 0.2800 9.0 1t61:C, 1t61:F
22 6mpx:A 673 50 0.1458 0.0208 0.2800 9.0 1t61:C, 1t61:F
23 7nc5:A 239 19 0.0938 0.0377 0.4737 9.6 7nc5:B, 7nc5:C, 7nc5:D, 7nc5:E, 7nc5:F, 7nc6:A, 7nc6:B, 7nc6:C, 7nc6:D, 7nc6:E, 7nc6:F, 7ncu:A, 7ncu:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218