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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KAQHAVILDKSTSDKLYKDVQSYRLVTVATLVDRLKINGSLARRCLKDLEEKGQIKQVVGHSKMKIYTRAI

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7r81:a2 71 71 1.0000 1.0000 1.0000 1.81e-46 7olc:SZ, 7old:SZ, 8oo0:SZ, 7z3n:SZ, 7z3o:SZ
2 8c3a:b 72 70 0.5915 0.5833 0.6000 9.33e-23 8c3a:DM, 8cq7:b, 8cq7:DM, 8cqw:b, 8cqw:DM, 8cre:b, 8cre:DM, 8oeq:b, 8oeq:DM, 7pzy:a, 7q08:a, 7q0f:a, 7q0p:a, 7q0r:a
3 7rr5:SZ 100 70 0.5775 0.4100 0.5857 1.55e-22 7a1g:L, 7b7d:K, 8bn3:D5, 8bqd:K, 8bqx:K, 8c00:K, 8c01:K, 8cah:L, 8cas:M, 8cbj:Z, 8ccs:1, 8cdl:1, 8cdr:1, 8ceh:1, 8cf5:1, 8cg8:1, 8cgn:1, 8civ:1, 8cku:1, 8cmj:1, 5dat:D5, 5dat:d5, 5dc3:D5, 5dc3:d5, 5dge:D5, 5dge:d5, 5dgf:D5, 5dgf:d5, 5dgv:D5, 5dgv:d5, 6eml:K, 8eub:BZ, 8evp:BZ, 8evq:BZ, 8evr:BZ, 8evs:BZ, 8evt:BZ, 8ewb:BZ, 8ewc:BZ, 6fai:Z, 5fci:D5, 5fci:d5, 5fcj:D5, 5fcj:d5, 6gq1:AP, 6gqb:AP, 6gqv:AP, 6hhq:a, 6hhq:d5, 5i4l:D5, 5i4l:d5, 6i7o:K, 6i7o:Kb, 3j6x:25, 3j6y:25, 3j77:25, 3j78:25, 5juo:WB, 5jup:WB, 5jus:WB, 5jut:WB, 5juu:WB, 8k2d:SZ, 8k82:SZ, 5lyb:D5, 5lyb:d5, 5m1j:Z2, 5mc6:K, 5mei:d5, 5mei:a, 7mpi:BZ, 7mpj:BZ, 7n8b:BZ, 5ndg:D5, 5ndg:d5, 5ndv:D5, 5ndv:d5, 5ndw:D5, 5ndw:d5, 7nrc:SK, 7nrd:SK, 5obm:D5, 5obm:d5, 5on6:d5, 5on6:a, 7osa:eS25, 7osm:eS25, 6q8y:K, 6rbd:Z, 6rbe:Z, 6s47:Ba, 6snt:Z, 6sv4:K, 6sv4:Kb, 6sv4:Kc, 6t4q:SZ, 6t7i:SZ, 6t7t:SZ, 6t83:Zb, 6t83:0, 5tbw:a, 5tbw:d5, 6tb3:K, 5tga:D5, 5tga:d5, 5tgm:D5, 5tgm:d5, 6tnu:K, 4u3m:D5, 4u3m:d5, 4u3n:D5, 4u3n:d5, 4u3u:D5, 4u3u:d5, 4u4n:D5, 4u4n:d5, 4u4o:D5, 4u4o:d5, 4u4q:D5, 4u4q:d5, 4u4r:D5, 4u4r:d5, 4u4u:D5, 4u4u:d5, 4u4y:D5, 4u4y:d5, 4u4z:D5, 4u4z:d5, 4u50:D5, 4u50:d5, 4u51:D5, 4u51:d5, 4u52:D5, 4u52:d5, 4u53:D5, 4u53:d5, 4u55:D5, 4u55:d5, 4u56:D5, 4u56:d5, 4u6f:D5, 4u6f:d5, 4uer:8, 4v6i:AV, 4v88:AZ, 4v88:CZ, 4v8y:AZ, 4v8z:AZ, 4v92:BZ, 6wdr:Z, 6woo:ZZ, 6xiq:AP, 6xir:AP, 8y0u:SZ, 6y7c:Z, 6z6j:SZ, 6z6k:SZ, 6zce:a, 7zpq:AZ, 6zqg:DZ, 7zrs:AZ, 6zu9:M, 7zuw:AZ, 7zux:DZ, 6zvi:J, 7zw0:sK
4 6fyx:Z 78 70 0.5352 0.4872 0.5429 7.04e-21 6fyy:Z, 6gsm:Z, 6gsn:Z, 8i7j:Z, 5it7:Z, 5it9:Z, 3j80:Z, 3j81:Z, 3jam:Z, 3jap:Z, 8rw1:Z, 8s8d:Z, 8s8e:Z, 8s8f:Z, 8s8g:Z, 8s8h:Z, 8s8i:Z, 8s8j:Z, 6uz7:Z
5 4v6w:AZ 74 70 0.5352 0.5135 0.5429 1.28e-20 6xu6:AZ, 6xu7:AZ, 6xu8:AZ
6 8ip8:ta 77 70 0.4930 0.4545 0.5000 1.40e-19 8ip9:ta, 8ipa:ta, 8ipb:ta, 8jiw:BZ, 8r57:Z
7 4v3p:SV 100 70 0.4930 0.3500 0.5000 3.53e-19 4v7e:BZ
8 7qiy:P 75 70 0.4507 0.4267 0.4571 1.38e-17 8auv:I, 8b2l:I1, 7qiz:ZA
9 6zj3:Sa 78 70 0.4648 0.4231 0.4714 8.39e-17
10 9bh5:AZ 71 70 0.4507 0.4507 0.4571 5.04e-16 9cai:AZ
11 5aj0:BZ 86 69 0.4930 0.4070 0.5072 7.52e-16 7a01:M3, 7a09:P, 5a2q:Z, 9bdl:AS25, 9bdn:AS25, 9bdp:AS25, 8bhf:a3, 9bkd:e, 9bln:e, 8btk:Ay, 7cpu:SZ, 7cpv:SZ, 4d5l:Z, 4d61:Z, 6d90:aa, 6d9j:aa, 9f1b:Ay, 9f1c:Ay, 9f1d:Ay, 6fec:W, 5flx:Z, 6g18:Z, 6g4s:Z, 6g4w:Z, 6g51:Z, 6g53:Z, 6g5h:Z, 6g5i:Z, 8g5y:SZ, 8g5z:SZ, 8g60:SZ, 8g61:SZ, 8g6j:SZ, 8glp:SZ, 6gz3:BZ, 6gz4:BZ, 6gz5:BZ, 6hcf:a1, 6hcm:a1, 8ifd:3O, 8ife:3O, 6ip5:3O, 6ip6:3O, 6ip8:3O, 3j7p:SZ, 3j7r:SZ, 3jag:ZZ, 3jah:ZZ, 3jai:ZZ, 3jaj:SZ, 3jan:SZ, 8jdj:AL, 8jdk:AL, 8jdl:AL, 8jdm:AL, 7jqb:a, 7jqc:a, 5k0y:W, 8k2c:SZ, 7k5i:Z, 4kzx:Z, 4kzy:Z, 4kzz:Z, 5lks:SZ, 7ls1:R3, 7ls2:R3, 5lzs:ZZ, 5lzt:ZZ, 5lzu:ZZ, 5lzv:ZZ, 5lzw:ZZ, 5lzx:ZZ, 5lzy:ZZ, 5lzz:ZZ, 7mdz:ZZ, 6mtb:ZZ, 6mtc:ZZ, 6mtd:ZZ, 6mte:ZZ, 7nwg:a2, 7nwh:ZZ, 7nwi:ZZ, 7o7y:Ay, 7o7z:Ay, 7o80:Ay, 7o81:Ay, 5oa3:Z, 6ole:SZ, 6olf:SZ, 6olg:BZ, 6oli:SZ, 6olz:BZ, 6om0:SZ, 6om7:SZ, 7oya:Z2, 7oyb:Z2, 7oyc:Z2, 7oyd:ZZ, 8oz0:m, 8p03:n, 8p09:n, 8p2k:Ay, 6p4g:a, 6p4h:a, 6p5i:a, 6p5j:a, 6p5k:a, 6p5n:a, 8pj1:e, 8pj2:e, 8pj3:e, 8pj4:e, 8pj5:e, 8pj6:e, 8ppk:Z, 8ppl:AZ, 8q7z:Ay, 8q87:Ay, 7qgg:SZ, 8qoi:SZ, 7qp6:e, 7qp7:e, 7qvp:SZ, 7qvp:RZ, 6qzp:SZ, 7r4x:Z, 6r5q:OO, 6r6g:OO, 6r6p:OO, 6r7q:OO, 8scb:ZZ, 6sgc:a1, 7syg:a, 7syh:a, 7syi:a, 7syj:a, 7syk:a, 7syl:a, 7sym:a, 7syn:a, 7syo:a, 7syp:a, 7syq:a, 7syr:a, 7sys:a, 7syt:a, 7syu:a, 7syv:a, 7syw:a, 7syx:a, 5t2c:AR, 8t4s:Z, 7toq:AS25, 7tor:AS25, 7tql:a, 7ucj:ZZ, 7uck:ZZ, 4ug0:SZ, 4ujc:CZ, 4ujd:CZ, 4uje:BZ, 4v6x:AZ, 5vyc:Z1, 5vyc:Z2, 5vyc:Z5, 5vyc:Z3, 5vyc:Z4, 5vyc:Z6, 6w2s:a, 6w2t:i, 7wtt:Z, 7wtu:Z, 7wtv:Z, 7wtw:Z, 7wtx:Z, 7wtz:Z, 7wu0:Z, 6xa1:SZ, 7xnx:SZ, 7xny:SZ, 8xsx:SZ, 8xsy:SZ, 8xsz:SZ, 8xxl:SZ, 8xxm:SZ, 8xxn:SZ, 6y0g:SZ, 8y0w:SZ, 8y0x:SZ, 6y2l:SZ, 6y57:SZ, 6yal:n, 6yam:n, 6yan:h, 6ybs:e, 8yoo:SZ, 8yop:SZ, 6z6l:SZ, 6z6m:SZ, 6z6n:SZ, 7zjw:Sk, 7zjx:Sk, 6zlw:a, 6zm7:SZ, 6zme:SZ, 6zmi:SZ, 6zmo:SZ, 6zmt:a, 6zmw:e, 6zn5:a, 6zoj:Z, 6zol:Z, 6zon:P, 6zp4:P, 6zuo:Z, 6zv6:Z, 6zvh:Z, 6zvj:P, 6zvk:M3, 6zxd:Z, 6zxe:Z, 6zxf:Z, 6zxg:Z, 6zxh:Z
12 5xxu:Z 71 69 0.4507 0.4507 0.4638 2.65e-14
13 4v8m:AU 85 68 0.4366 0.3647 0.4559 6.82e-14 8ova:AU, 8ove:AU
14 7ase:a 70 67 0.3944 0.4000 0.4179 1.81e-11 5opt:a
15 8rxh:Sa 105 69 0.4225 0.2857 0.4348 4.86e-11 8a3w:Sa, 8a98:Sa, 6az1:a, 8ovj:Sa, 8rxx:Sa
16 4v5o:A8 93 69 0.2676 0.2043 0.2754 4.12e-07 4bts:A8, 4bts:B8, 4bts:C8, 4bts:D8, 4v5o:B8
17 5xyi:Z 73 67 0.2676 0.2603 0.2836 1.66e-04
18 7qca:SZ0 76 54 0.2676 0.2500 0.3519 2.17e-04
19 7qep:D5 87 65 0.2817 0.2299 0.3077 6.39e-04
20 6zu5:SZ0 72 68 0.2254 0.2222 0.2353 0.003
21 8br8:Sc 75 59 0.1972 0.1867 0.2373 0.017 8brm:Sc, 8bsi:Sc, 8bsj:Sc, 8btd:Sc, 8btr:Sc, 8fvy:Z, 8g4s:Z, 7pwf:Z
22 3ois:A 268 30 0.1831 0.0485 0.4333 1.5 3ois:B, 3ois:C, 3ois:D
23 3hpv:A 297 21 0.1549 0.0370 0.5238 1.6 3hpv:B, 3hpv:C, 3hpv:D, 3hpy:A, 3hpy:B, 3hpy:C, 3hpy:D, 3hq0:A, 3hq0:B, 3hq0:C, 3hq0:D
24 6q2b:A 150 25 0.1831 0.0867 0.5200 2.3 6q2b:B
25 5yhx:N 146 60 0.2535 0.1233 0.3000 2.8 5yhx:A, 5yhx:B, 5yhx:G, 5yhx:H, 5yhx:M, 5yhx:S, 5yhx:T, 5yhy:A, 5yhz:A, 5yi0:B, 5yi0:A, 5yi0:C, 5yi0:D, 5yi2:A, 5yi2:B, 5yi2:E, 5yi2:F, 5yi2:I, 5yi2:J, 5yi2:M, 5yi2:N, 5yi3:A, 5yi3:B, 5yi3:E, 5yi3:F, 5yi3:I, 5yi3:J, 5yi3:M, 5yi3:N
26 5el5:5A 48 20 0.1408 0.2083 0.5000 3.6
27 2ha8:A 159 22 0.1408 0.0629 0.4545 4.3 2ha8:B
28 8rd8:Af 211 31 0.1549 0.0521 0.3548 4.9 8rdv:Af, 8rdw:Af
29 2bw1:G 165 50 0.2113 0.0909 0.3000 6.1 2bw1:C, 2bw1:D, 2bw1:A, 2bw1:B, 2bw1:H, 2bw1:E, 2bw1:F, 2bw1:K, 2bw1:L, 2bw1:I, 2bw1:J, 1umn:K, 2ux1:A, 2ux1:B, 2ux1:C, 2ux1:D, 2ux1:E, 2ux1:F, 2ux1:G, 2ux1:H, 2ux1:I, 2ux1:J, 2ux1:K, 2ux1:L, 2v15:A, 2v15:B, 2v15:C, 2v15:D, 2v15:E, 2v15:F, 2v15:G, 2v15:H, 2v15:I, 2v15:J, 2v15:K, 2v15:L, 2xjm:A, 2xjm:B, 2xjm:C, 2xjm:D, 2xjm:E, 2xjm:F, 2xjm:G, 2xjm:H, 2xjm:I, 2xjm:J, 2xjm:K, 2xjm:L, 2xjn:A, 2xjn:C, 2xjn:D, 2xjn:E, 2xjn:F, 2xjn:G, 2xjn:H, 2xjn:I, 2xjn:J, 2xjn:K, 2xjn:L, 2xkq:A, 2xkq:B, 2xkq:C, 2xkq:D, 2xkq:E, 2xkq:F, 2xkq:G, 2xkq:H, 2xkq:I, 2xkq:J, 2xkq:K, 2xkq:L
30 5xgd:A 548 30 0.1690 0.0219 0.4000 6.4 8pps:A, 8pps:B, 5xge:A
31 9c57:G 878 34 0.1972 0.0159 0.4118 7.3
32 8eug:G 230 34 0.1831 0.0565 0.3824 8.5 8esq:G, 8esr:G, 8etc:G, 8etg:G, 8eth:G, 8eti:G, 8etj:G, 8eui:G, 8eup:G, 8euy:G, 8ev3:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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