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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KAQEESKIEDVDKILNDILSISSECIQPDELRVKLLLKRKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIA
DWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRS
EGEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSA
IFMDDSESDVNRKIKKAYCPPNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKD
NVAMYINKLLQPVRDHFQNNIEAKNLLNEIKKYKVT

The query sequence (length=356) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ror:B 362 356 1.0000 0.9834 1.0000 0.0 7ror:A, 7ros:A, 7ros:B, 7rot:A, 7rot:B, 3vgj:A, 3vgj:B
2 7sc6:A 349 341 0.5758 0.5874 0.6012 3.54e-153 7scq:A, 7scq:B
3 5usf:A 682 351 0.5000 0.2610 0.5071 1.79e-118 3p0h:A, 3p0i:A, 3p0j:C, 3p0j:D, 5usf:B
4 5usf:A 682 302 0.2360 0.1232 0.2781 7.50e-22 3p0h:A, 3p0i:A, 3p0j:C, 3p0j:D, 5usf:B
5 3p0j:A 657 351 0.4888 0.2648 0.4957 1.60e-114 3p0h:B, 3p0i:B, 3p0j:B
6 3p0j:A 657 302 0.2275 0.1233 0.2682 1.21e-18 3p0h:B, 3p0i:B, 3p0j:B
7 2j5b:A 321 343 0.4045 0.4486 0.4198 2.38e-82 2j5b:B
8 2cyc:A 371 372 0.3539 0.3396 0.3387 1.56e-67 2cyc:B
9 2cyb:A 319 326 0.3399 0.3793 0.3712 3.72e-56 2cyb:B
10 4nx2:A 313 315 0.3202 0.3642 0.3619 1.42e-49 2ag6:A, 7ckg:B, 3d6u:A, 3d6v:A, 2hgz:A, 4hjx:A, 4hjx:B, 4hpw:A, 1j1u:A, 5l7p:B, 3n2y:A, 3n2y:B, 5n5u:A, 4nda:A, 5nsf:B, 5nsf:A, 5nsf:C, 5nsf:D, 4pbr:A, 4pbs:A, 4pbt:A, 2pxh:A, 3qe4:A, 3qe4:B, 6wrk:A, 6wrn:A, 6wrq:A, 6wrt:A, 7ynw:A, 7ynw:B, 1zh0:A, 1zh6:A, 2zp1:A
11 7rou:A 335 313 0.2921 0.3104 0.3323 2.98e-37 1q11:A, 4q93:A, 4qbt:A, 5thh:A
12 2dlc:X 339 321 0.2781 0.2920 0.3084 5.89e-28
13 6ncr:A 342 315 0.2303 0.2398 0.2603 1.90e-11 6ncr:B
14 2g36:A 322 247 0.1742 0.1925 0.2510 1.93e-08
15 2a4m:C 331 204 0.1433 0.1541 0.2500 1.57e-07 1yi8:C, 1yia:B, 1yid:B
16 5ujj:A 446 242 0.1798 0.1435 0.2645 4.08e-07 2ake:A, 2azx:A, 2azx:B, 2dr2:A, 2quh:A, 2quh:B, 2qui:A, 2qui:B, 2quj:A, 2quj:B, 1r6t:A, 1r6u:A, 5ujj:B
17 3tze:A 360 120 0.0955 0.0944 0.2833 8.98e-07 3tze:B
18 7cms:A 328 318 0.2022 0.2195 0.2264 9.71e-07 7cki:A, 7cms:B, 5dk4:A, 7eer:A, 7eer:B, 7eer:C, 7eer:D, 1i6k:A, 1i6l:A, 1i6m:A, 1m83:A, 1mau:A, 1maw:A, 1maw:B, 1maw:C, 1maw:D, 1maw:E, 1maw:F, 1mb2:A, 1mb2:B, 1mb2:C, 1mb2:D, 1mb2:E, 1mb2:F, 2ov4:A
19 8i1w:B 333 242 0.1770 0.1892 0.2603 1.06e-06 8i1y:A, 8i1y:B, 8i1z:A, 8i1z:B, 8i27:A, 8i27:B, 8i2a:B, 8i2a:A, 8i2c:A, 8i2c:B, 8i2j:A, 8i2j:B, 8i2l:B, 8i2l:A, 8i2m:A, 8i2m:B, 8i4i:A, 8i4i:B, 5v0i:A, 5v0i:B
20 4j75:A 374 156 0.1264 0.1203 0.2885 1.24e-06 4j75:B, 4jfa:A, 4jfa:B, 4jfa:D
21 3jxe:B 363 229 0.1489 0.1460 0.2314 3.08e-05 3jxe:A
22 3fhj:D 286 113 0.0927 0.1154 0.2920 6.90e-05 3fhj:C
23 3a04:A 367 230 0.1461 0.1417 0.2261 1.15e-04 3a05:A
24 2yy5:B 346 246 0.1489 0.1532 0.2154 1.71e-04 2yy5:A, 2yy5:C, 2yy5:D
25 3fi0:G 302 120 0.0927 0.1093 0.2750 2.04e-04 3fhj:A, 3fhj:B, 3fhj:E, 3fhj:F, 3fi0:A, 3fi0:B, 3fi0:C, 3fi0:D, 3fi0:E, 3fi0:F, 3fi0:H, 3fi0:I, 3fi0:J, 3fi0:K, 3fi0:L, 3fi0:M, 3fi0:N, 3fi0:O, 3fi0:P, 3fi0:Q, 3fi0:R
26 3kt8:D 410 67 0.0702 0.0610 0.3731 3.66e-04 3kt0:A, 3kt3:A, 3kt3:B, 3kt3:C, 3kt3:D, 3kt6:A, 3kt6:B, 3kt6:C, 3kt6:D, 3kt8:A, 3kt8:B, 3kt8:C
27 3tzl:B 320 265 0.1854 0.2062 0.2491 0.005 3tzl:A
28 6dfu:A 332 244 0.1629 0.1747 0.2377 0.007 6dfu:B
29 6bqz:A 215 181 0.1208 0.2000 0.2376 0.011 6bqz:B
30 5ekd:A 327 229 0.1292 0.1407 0.2009 0.050 5ekd:B
31 7elt:A 330 58 0.0449 0.0485 0.2759 0.10 7ens:A, 7ent:A, 7ev2:A, 7ev3:A
32 7zm7:E 353 42 0.0478 0.0482 0.4048 0.11 7zmb:E, 7zmg:E
33 3sz3:A 341 201 0.1264 0.1320 0.2239 0.13
34 1h3f:B 406 81 0.0730 0.0640 0.3210 0.34 1h3f:A
35 1h3e:A 427 81 0.0730 0.0609 0.3210 0.36
36 7ob6:A 222 79 0.0590 0.0946 0.2658 1.0
37 3h4l:B 344 62 0.0534 0.0552 0.3065 1.9 3h4l:A
38 7yet:A 999 64 0.0534 0.0190 0.2969 2.3
39 7ohw:b 259 65 0.0562 0.0772 0.3077 2.7
40 5evo:A 213 68 0.0590 0.0986 0.3088 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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