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BioLiP
>protein
KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKE

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ew0:A 77 66 1.0000 0.8571 1.0000 7.67e-46 6de9:A, 3ew0:B, 4ezf:A, 4ezf:B, 4f1e:A, 4f1e:B, 4f1e:C, 4f1e:D, 4f1e:E, 4f1e:F, 4f1e:G, 4f1e:H, 4f1e:I, 4f1e:J, 4f1e:K, 4f1e:L, 4f1e:M, 4f1e:N, 4f1e:O, 4f1e:P, 4f1e:Q, 4f1e:R, 4f28:A, 4f28:B, 4f2c:A, 4f2c:B, 3lpq:A, 3lpq:B, 7p0o:A, 7p0o:B, 2qd0:A, 2qd0:B, 2qh7:A, 2qh7:B, 2r13:A, 3ree:A
2 3fnv:B 68 66 0.6970 0.6765 0.6970 1.33e-30 3fnv:A, 4oo7:A, 4oo7:B, 4ooa:A, 4ooa:B, 4ooa:C, 4ooa:D, 4ooa:E, 4ooa:F, 7p0p:A, 7p0p:B, 7p0p:C, 7p0p:D
3 7yvz:A 63 62 0.5758 0.6032 0.6129 6.75e-26
4 3s2r:B 78 63 0.4697 0.3974 0.4921 1.45e-17 3s2q:A, 3s2q:B, 3s2r:A
5 3tbn:A 87 17 0.1667 0.1264 0.6471 0.035
6 3tbn:A 87 26 0.1667 0.1264 0.4231 1.0
7 6avj:A 92 42 0.2727 0.1957 0.4286 0.088 6avj:B, 6avj:C
8 3tbm:A 61 22 0.1667 0.1803 0.5000 0.090 3tbm:B
9 3tbo:A 54 22 0.1818 0.2222 0.5455 0.31
10 5tbd:G 112 33 0.1970 0.1161 0.3939 1.4 5tbd:F, 5tbd:B, 5tbd:K
11 6z1p:AV 129 24 0.1818 0.0930 0.5000 1.7
12 2xn2:A 729 60 0.2424 0.0219 0.2667 2.2
13 8any:e 238 55 0.2424 0.0672 0.2909 5.0 3j7y:e, 7odr:e, 7ods:e, 7odt:e, 8oir:Bv, 8oit:Bv, 8pk0:e, 7po4:e, 7qi4:e, 7qi5:e, 7qi6:e, 8qsj:e, 6zm5:e, 6zm6:e
14 2zze:A 744 23 0.1515 0.0134 0.4348 7.9 2zze:B, 2zzf:A, 2zzg:A, 2zzg:B
15 7bkb:B 296 35 0.1364 0.0304 0.2571 9.0 7bkb:b, 7bkc:B, 7bkc:b, 7bkd:B, 7bkd:b, 7bke:B, 7bke:b

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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