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BioLiP
>protein
KAMINLHIQKDNPKIVHAFDMEDLAAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKK

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ew0:A 77 64 0.9688 0.8052 0.9688 5.98e-43 6de9:A, 3ew0:B, 4ezf:A, 4ezf:B, 4f1e:A, 4f1e:B, 4f1e:C, 4f1e:D, 4f1e:E, 4f1e:F, 4f1e:G, 4f1e:H, 4f1e:I, 4f1e:J, 4f1e:K, 4f1e:L, 4f1e:M, 4f1e:N, 4f1e:O, 4f1e:P, 4f1e:Q, 4f1e:R, 4f28:A, 4f28:B, 4f2c:A, 4f2c:B, 3lpq:A, 3lpq:B, 7p0o:A, 7p0o:B, 2qd0:A, 2qd0:B, 2qh7:A, 2qh7:B, 2r13:A, 3ree:A
2 3fnv:B 68 64 0.6875 0.6471 0.6875 8.17e-30 3fnv:A, 4oo7:A, 4oo7:B, 4ooa:A, 4ooa:B, 4ooa:C, 4ooa:D, 4ooa:E, 4ooa:F, 7p0p:A, 7p0p:B, 7p0p:C, 7p0p:D
3 7yvz:A 63 62 0.5781 0.5873 0.5968 3.45e-25
4 3s2r:B 78 62 0.4844 0.3974 0.5000 7.26e-18 3s2q:A, 3s2q:B, 3s2r:A
5 3tbn:A 87 17 0.1719 0.1264 0.6471 0.031
6 3tbn:A 87 26 0.1875 0.1379 0.4615 0.18
7 3tbm:A 61 23 0.1719 0.1803 0.4783 0.055 3tbm:B
8 6avj:A 92 26 0.2188 0.1522 0.5385 0.16 6avj:B, 6avj:C
9 3tbo:A 54 22 0.1875 0.2222 0.5455 0.26
10 7qy5:B 320 49 0.2344 0.0469 0.3061 1.0 7qy5:D
11 8any:e 238 55 0.2500 0.0672 0.2909 3.5 3j7y:e, 7odr:e, 7ods:e, 7odt:e, 8oir:Bv, 8oit:Bv, 8pk0:e, 7po4:e, 7qi4:e, 7qi5:e, 7qi6:e, 8qsj:e, 6zm5:e, 6zm6:e
12 6z1p:AV 129 20 0.1562 0.0775 0.5000 3.7
13 4g1e:A 964 64 0.3125 0.0207 0.3125 3.9 5ffg:A, 5ffo:A, 5ffo:E, 4g1m:A, 3ije:A, 1jv2:A, 1l5g:A, 1m1x:A, 6mk0:A, 4mmx:A, 4mmy:A, 4mmz:A, 6msl:A, 6msu:A, 6naj:A, 5nem:A, 5ner:A, 5net:A, 4o02:A, 6om1:A, 6om1:C, 6om1:E, 6om1:G, 6om2:A, 6om2:C, 8tcf:A, 8tcg:A, 1u8c:A, 6uja:A, 6ujb:A, 6ujc:A, 4um8:C, 4um8:A, 4um9:A, 4um9:C, 8vs6:A, 8vsd:A, 7y1t:A
14 1gqb:A 131 33 0.1406 0.0687 0.2727 6.0 1gqb:B
15 1is3:A 134 12 0.1406 0.0672 0.7500 7.8 1is4:A, 1wld:A, 1wlw:A
16 8bfy:A 393 21 0.1719 0.0280 0.5238 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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