Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIRLLGLPLVGRVAAGE
PLIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVARLKKQGNKVELLPEN
SEFKPIVVDLRQQSFTIEGLAVGVIRNG

The query sequence (length=188) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3jsp:A 194 194 1.0000 0.9691 0.9691 2.84e-131 3jso:A, 3jso:B, 3jsp:B
2 8b0v:A 124 123 0.4149 0.6290 0.6341 1.71e-49 8b0v:B
3 3lba:A 260 32 0.0638 0.0462 0.3750 2.1
4 3eef:A 173 73 0.1117 0.1214 0.2877 2.2 3eef:B
5 6o9a:A 271 68 0.1117 0.0775 0.3088 2.6 6o9a:B
6 8ome:A 298 41 0.0745 0.0470 0.3415 3.7 2hw1:A, 8ome:D, 8ome:B, 8ome:C
7 1yf3:A 259 29 0.0638 0.0463 0.4138 3.9 1q0s:A, 1q0t:A, 1q0t:B, 1yf3:B, 1yfj:A, 1yfj:B, 1yfj:C, 1yfj:D, 1yfj:E, 1yfj:F, 1yfl:A, 1yfl:B, 1yfl:D, 1yfl:E
8 5t0h:V 480 84 0.1277 0.0500 0.2857 4.1 6epe:S, 6epf:S, 5vft:V
9 8ug1:B 305 41 0.0745 0.0459 0.3415 4.1 9fhd:A, 9fhd:B, 9fhe:A, 9fhe:B, 3nbv:A, 3nbv:B, 3nbw:A, 3nbw:B, 3nc2:A, 3nc2:B, 3nc9:A, 3nc9:B, 3nca:A, 8omf:A, 8omf:B, 8omj:A, 8omj:B, 8omk:A, 8omk:B, 3q92:A, 3q92:B, 3qa2:A, 3qa2:B, 3qai:A, 3qai:B, 3ro4:A, 8ug1:A, 8ug3:A, 8ug3:B, 6ul7:A, 6w0n:A, 6w0n:B, 6w0w:A, 6w0w:B, 6w0x:A, 6w0x:B, 6w0y:A, 6w0y:B, 6w0z:A, 6w0z:B, 5wbm:A, 5wbm:B, 5wbo:A, 5wbo:B, 5wbp:A, 5wbq:A, 5wbq:B, 5wbr:A, 5wbr:B, 5wbz:A, 5wbz:B
10 4ft6:A 387 42 0.0691 0.0336 0.3095 4.6
11 6ncs:A 285 35 0.0851 0.0561 0.4571 5.8 6ncs:B
12 2gbp:A 309 70 0.1117 0.0680 0.3000 7.3 2fvy:A, 2fw0:A, 8fxt:A, 3ga5:A, 3ga5:B, 3gbp:A, 1gca:A, 1gcg:A, 1glg:A, 2hph:A, 2ipl:A, 2ipm:A, 2ipn:A, 2qw1:A
13 6lu4:A 481 76 0.1277 0.0499 0.3158 7.3 6lu3:A
14 4v8p:BS 126 38 0.0798 0.1190 0.3947 7.8 4v8p:CS, 4v8p:ES, 4v8p:GS
15 3icc:A 255 36 0.0798 0.0588 0.4167 9.8 3icc:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218