Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KALFQPADVILDPNTANPILLVSDDQRSLQRADERQNLPDNPERFDWHYCVLGCKSFTSGRHYWEVEVGDRKEWHIGVCQ
ENVERKCWVKMTPENGFWTVGLTDGSKYRALSDPRTKLTVANPPQRVGVFLDYETGEVSFYNAMDGSHIYTFPHTFFSGP
LWPVFRILTLEPTALTICPA

The query sequence (length=180) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8jya:B 191 180 1.0000 0.9424 1.0000 4.15e-137 8hjt:C, 8hjt:D, 8jy9:A, 8jy9:B, 8jyf:B
2 6j0k:A 191 179 0.8000 0.7539 0.8045 3.71e-110 6j0g:A, 6j0g:B, 6j0g:C, 6j0g:D, 6j0k:B
3 8ixv:A 187 180 0.7944 0.7647 0.7944 2.89e-109 8ize:A, 8izg:A, 6j06:A, 6j06:C, 6j06:B, 8jyc:C, 8jyc:D, 8jye:C, 8jye:D, 4n7u:A, 5zxk:A
4 8hjt:A 197 178 0.5500 0.5025 0.5562 9.14e-66 8hjt:B
5 8igt:A 208 182 0.5278 0.4567 0.5220 8.00e-59 8jyc:A, 8jyc:B, 8jye:A, 8jye:B
6 4cg4:C 376 178 0.4667 0.2234 0.4719 1.67e-53 4cg4:D, 4cg4:E, 4cg4:F
7 8pd6:A 181 169 0.4667 0.4641 0.4970 2.26e-52
8 7ovx:A 174 173 0.4000 0.4138 0.4162 1.13e-37 8a5l:A, 8a5m:A, 8a5m:B, 8a8x:A, 8a8x:C, 7ow2:A, 7ow2:B, 7ow2:C, 7ow2:D, 8r5b:A, 8r5b:B, 8r5c:A, 7w0q:A, 7w0s:B, 7w0s:C, 7w0s:E, 7w0t:F, 7w0t:B, 7w0t:C, 7x6y:A, 7x6z:A, 7x70:A
9 7xyz:B 456 167 0.2944 0.1162 0.3174 6.50e-27 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
10 7xt2:B 388 167 0.2722 0.1263 0.2934 1.23e-23 7xt2:A
11 4b3n:A 557 163 0.3278 0.1059 0.3620 2.15e-22 4b3n:B
12 7njn:C 536 61 0.0833 0.0280 0.2459 3.9 6foc:A, 6foc:B, 6foc:C, 8g08:B, 8g08:C, 8g08:A, 8g09:A, 8g09:B, 8g09:C, 8g0a:A, 8g0a:B, 8g0a:C, 8g0c:B, 8g0c:C, 8g0c:A, 8g0d:C, 8g0d:A, 8g0d:B, 8g0e:A, 8g0e:B, 8g0e:C, 7jg5:A, 7jg5:B, 7jg5:C, 7jga:A, 7jga:B, 7jga:C, 7njk:A, 7njk:B, 7njk:C, 7njl:A, 7njl:B, 7njl:C, 7njm:A, 7njm:B, 7njm:C, 7njn:A, 7njn:B, 7njo:A, 7njo:B, 7njo:C, 7njp:A, 7njp:B, 7njp:C, 7njq:A, 7njq:B, 7njq:C, 7njr:A, 7njr:B, 7njr:C, 7njs:A, 7njs:B, 7njs:C, 7nk7:A, 7nk7:B, 7nk7:C, 7nkh:A, 7nkh:B, 7nkh:C, 7nkj:A, 7nkj:B, 7nkj:C, 7y5a:A, 7y5a:B, 7y5a:C, 7y5b:A, 7y5b:B, 7y5b:C, 7y5c:A, 7y5c:B, 7y5c:C
13 3muo:A 684 27 0.0722 0.0190 0.4815 4.1 3iuq:A, 3iur:A, 3ivm:A
14 8p23:B 715 17 0.0389 0.0098 0.4118 4.5 8p23:A, 8p27:A, 8p27:B, 8p28:A, 8p28:B, 8p28:C, 8p28:D, 8p2c:A, 8p2c:B, 8p2c:C, 8p2c:D, 8p2d:A, 8p2d:B, 8p2s:A, 8p2s:B, 8p39:A, 8p39:B
15 6ghr:B 342 49 0.0778 0.0409 0.2857 4.7 4boy:A, 4boy:B, 6gfo:A, 6gfo:B, 6gfo:C, 6gfo:D, 6gfp:A, 6gfp:B, 6gfq:B, 6gfq:A, 6gfr:A, 6gfr:B, 6gg7:B, 6gg7:A, 6ghl:A, 6ghl:D, 6ghl:B, 6ghl:C, 6ghr:D, 6ghr:A, 6ghr:C, 6gve:D, 6gve:A, 6gve:E, 6gve:F, 6gve:I, 6gve:K, 6gve:N, 6gve:O, 3zcx:A, 3zcx:B, 3zdf:B, 3zdf:A
16 4uwq:A 548 56 0.1000 0.0328 0.3214 4.9 4uwq:D, 4uwq:G, 4uwq:J, 2wdc:A, 2wdd:A, 2wde:A, 2wdf:A
17 2hox:B 427 26 0.0611 0.0258 0.4231 5.5 2hor:A, 2hox:C, 2hox:A, 2hox:D, 1lk9:B, 1lk9:A
18 7dd9:A 1129 91 0.1333 0.0213 0.2637 5.6 7dd9:C, 7dd9:E, 7dd9:G, 6lz1:A, 6lz1:B, 6lz1:C, 6lz1:D
19 6fhj:A 979 67 0.1167 0.0215 0.3134 5.7 6fhn:A
20 5hiw:A 391 39 0.0778 0.0358 0.3590 8.8
21 3ah1:B 288 34 0.0611 0.0382 0.3235 9.1 3ah1:A, 3ah4:B
22 8eg3:A 554 48 0.0833 0.0271 0.3125 9.4 1p49:A
23 7aoe:A 1401 71 0.1000 0.0128 0.2535 9.7 7aoc:A, 7aod:A, 7aod:M
24 6eg1:A 220 56 0.0833 0.0682 0.2679 9.8 6eg1:C

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218