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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KALFKPADVILDPKTANPILLVSEDQRSVQRAKEPQDLPDNPERFNWHYCVLGCESFISGRHYWEVEVGDRKEWHIGVCS
KNVQRKGWVKMTPENGFWTMGLTDGNKYRTLTEPRTNLKLPKPPKKVGVFLDYETGDISFYNAVDGSHIHTFLDVSFSEA
LYPVFRILTLEPTALTICPAL

The query sequence (length=181) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ixv:A 187 180 0.9945 0.9626 1.0000 4.68e-136 8ize:A, 8izg:A, 6j06:A, 6j06:C, 6j06:B, 8jyc:C, 8jyc:D, 8jye:C, 8jye:D, 4n7u:A, 5zxk:A
2 6j0k:A 191 179 0.8729 0.8272 0.8827 6.23e-119 6j0g:A, 6j0g:B, 6j0g:C, 6j0g:D, 6j0k:B
3 8jya:B 191 180 0.7901 0.7487 0.7944 1.42e-109 8hjt:C, 8hjt:D, 8jy9:A, 8jy9:B, 8jyf:B
4 8hjt:A 197 179 0.5249 0.4822 0.5307 1.46e-60 8hjt:B
5 8igt:A 208 183 0.5083 0.4423 0.5027 1.58e-55 8jyc:A, 8jyc:B, 8jye:A, 8jye:B
6 8pd6:A 181 169 0.4641 0.4641 0.4970 1.58e-51
7 4cg4:C 376 176 0.4475 0.2154 0.4602 2.11e-50 4cg4:D, 4cg4:E, 4cg4:F
8 7ovx:A 174 172 0.3978 0.4138 0.4186 4.13e-39 8a5l:A, 8a5m:A, 8a5m:B, 8a8x:A, 8a8x:C, 7ow2:A, 7ow2:B, 7ow2:C, 7ow2:D, 8r5b:A, 8r5b:B, 8r5c:A, 7w0q:A, 7w0s:B, 7w0s:C, 7w0s:E, 7w0t:F, 7w0t:B, 7w0t:C, 7x6y:A, 7x6z:A, 7x70:A
9 7xyz:B 456 170 0.2928 0.1162 0.3118 1.94e-23 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
10 7xt2:B 388 170 0.2873 0.1340 0.3059 6.99e-23 7xt2:A
11 4b3n:A 557 162 0.2873 0.0934 0.3210 2.01e-18 4b3n:B
12 3v97:A 667 41 0.0773 0.0210 0.3415 3.9 3v8v:A
13 5ul4:A 729 67 0.0939 0.0233 0.2537 5.2 5ul3:A
14 3muo:A 684 27 0.0718 0.0190 0.4815 5.3 3iuq:A, 3iur:A, 3ivm:A
15 2y5p:A 72 69 0.1160 0.2917 0.3043 6.1 2y5p:B
16 8eg3:A 554 48 0.0829 0.0271 0.3125 7.1 1p49:A
17 5lj5:O 283 68 0.1050 0.0671 0.2794 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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