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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KAHIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAA
PDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAKINGVPFE
E

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1n5w:A 161 161 1.0000 1.0000 1.0000 4.93e-120 1n5w:D, 1n60:A, 1n60:D, 1n61:A, 1n61:D, 1n62:A, 1n62:D, 1n63:A, 1n63:D, 1zxi:A, 1zxi:D
2 1ffu:D 156 154 0.6584 0.6795 0.6883 2.04e-77 1ffu:A, 1ffv:A, 1ffv:D
3 4zoh:C 161 155 0.6087 0.6087 0.6323 2.05e-66
4 1t3q:A 162 145 0.4410 0.4383 0.4897 3.24e-45 1t3q:D
5 1sb3:C 161 152 0.4534 0.4534 0.4803 3.86e-45 1rm6:C, 1rm6:F, 1sb3:F
6 3hrd:D 160 153 0.4286 0.4313 0.4510 2.47e-41 3hrd:H
7 5y6q:A 157 154 0.4037 0.4140 0.4221 1.03e-40
8 7dqx:C 160 144 0.4099 0.4125 0.4583 2.13e-37 7dqx:F
9 4c7y:A 907 154 0.4099 0.0728 0.4286 2.34e-33 4c7z:A, 4c80:A, 3fah:A, 3fc4:A, 3l4p:A, 1sij:A, 4us8:A, 4us9:A, 4usa:A, 1vlb:A
10 1dgj:A 906 154 0.4099 0.0728 0.4286 6.59e-33
11 8gy3:B 154 149 0.3913 0.4091 0.4228 6.77e-33
12 5g5g:A 175 165 0.4099 0.3771 0.4000 7.85e-33 5g5h:A
13 1jro:A 450 148 0.3540 0.1267 0.3851 3.56e-22 1jro:C, 1jro:E, 1jro:G, 1jrp:A, 1jrp:C, 1jrp:E, 1jrp:G, 2w3r:A, 2w3r:C, 2w3r:E, 2w3r:G, 2w3s:A, 2w3s:C, 2w3s:E, 2w3s:G, 2w54:A, 2w54:C, 2w54:E, 2w54:G, 2w55:A, 2w55:C, 2w55:E, 2w55:G
14 3zyv:B 1262 150 0.3478 0.0444 0.3733 3.60e-21 3zyv:A, 3zyv:C, 3zyv:D
15 7px0:B 1253 169 0.3727 0.0479 0.3550 4.24e-21 7px0:A, 7px0:C, 7px0:D
16 7orc:B 1299 150 0.3292 0.0408 0.3533 5.57e-21 5epg:A, 7opn:A, 7opn:B, 7orc:A, 6q6q:A, 4uhw:A, 4uhx:A
17 8emt:A 1254 150 0.3292 0.0423 0.3533 6.61e-21
18 8emt:B 1221 150 0.3292 0.0434 0.3533 7.70e-21
19 2e1q:A 1307 155 0.3478 0.0428 0.3613 1.20e-20 6a7x:A, 6a7x:B, 6abu:A, 6abu:B, 6ac1:A, 6ac1:B, 6ac4:A, 6ac4:B, 6ad4:A, 6ad4:B, 6adj:A, 6adj:B, 6aju:A, 6aju:F, 3an1:A, 3an1:B, 3b9j:A, 3b9j:I, 2ckj:B, 2ckj:C, 2ckj:D, 2e1q:B, 2e1q:C, 2e1q:D, 2e3t:A, 2e3t:B, 3etr:A, 3etr:L, 3eub:A, 3eub:J, 3eub:S, 3eub:2, 1fiq:A, 3nrz:A, 3nrz:J, 3ns1:A, 3ns1:J, 3nvv:A, 3nvv:J, 3nvw:A, 3nvw:J, 3nvy:A, 3nvy:J, 3nvz:A, 3nvz:J, 3sr6:A, 3sr6:J, 1wyg:A, 4yrw:A, 4yrw:B, 4ysw:A, 4ysw:B, 4yty:A, 4yty:B, 4ytz:A, 4ytz:B
20 2ckj:A 1264 155 0.3478 0.0443 0.3613 1.28e-20
21 3ax7:A 1225 164 0.3665 0.0482 0.3598 2.02e-20 3ax7:B, 3ax9:A, 3ax9:B
22 1fo4:A 1299 155 0.3478 0.0431 0.3613 2.37e-20 3am9:A, 3am9:B, 3amz:A, 3amz:B, 3b9j:B, 3b9j:C, 3b9j:J, 3b9j:K, 3bdj:A, 3bdj:B, 3etr:B, 3etr:C, 3etr:M, 3etr:N, 3eub:B, 3eub:C, 3eub:K, 3eub:L, 3eub:T, 3eub:U, 3eub:3, 3eub:4, 1fiq:B, 1fo4:B, 8j79:A, 8j79:B, 1n5x:A, 1n5x:B, 3nrz:B, 3nrz:C, 3nrz:K, 3nrz:L, 3ns1:B, 3ns1:C, 3ns1:K, 3ns1:L, 3nvv:B, 3nvv:C, 3nvv:K, 3nvv:L, 3nvw:B, 3nvw:C, 3nvw:K, 3nvw:L, 3nvy:B, 3nvy:C, 3nvy:K, 3nvy:L, 3nvz:B, 3nvz:C, 3nvz:K, 3nvz:L, 3sr6:B, 3sr6:C, 3sr6:K, 3sr6:L, 3una:A, 3una:B, 3unc:A, 3unc:B, 3uni:A, 3uni:B, 1v97:A, 1v97:B, 1vdv:A, 1vdv:B
23 7a76:A 326 52 0.1118 0.0552 0.3462 0.21 7a76:B, 7a76:C, 7a76:D
24 8st9:C 178 34 0.0870 0.0787 0.4118 2.4 8st9:A
25 3mp2:A 211 66 0.0994 0.0758 0.2424 2.6
26 5fmp:A 184 57 0.1056 0.0924 0.2982 5.3 5aqc:A, 5aqc:B, 5cw8:A, 5cw8:B, 5cxi:A, 5cxi:B, 5fmp:B, 5ua1:B, 5ua1:A, 5ua2:A
27 8wwy:C 139 56 0.0994 0.1151 0.2857 5.6
28 7obb:A 1510 16 0.0559 0.0060 0.5625 7.6
29 7ob9:A 1535 16 0.0559 0.0059 0.5625 7.7 7oba:A
30 7t3s:A 210 36 0.0870 0.0667 0.3889 9.3 7uqu:AAA
31 8b6f:AL 218 34 0.0683 0.0505 0.3235 9.7 8bqs:AL, 8gym:s8, 8gym:S8, 8gzu:s8, 8gzu:S8, 7tgh:S8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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