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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KAGEEVIFTVPIKKIKKIVPRWKRAPRAVKFVREFVARHAKAQEVIIDPKVNEKIWERGIEKPPSKLRVKVKVEEEKREG
EETVRIAYVT

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4v6u:Ba 90 90 1.0000 1.0000 1.0000 2.19e-56 4v4n:Aa
2 6skf:Bc 89 88 0.7000 0.7079 0.7159 5.36e-35 6skg:Bc, 6th6:Bc
3 4v9f:X 90 83 0.3667 0.3667 0.3976 1.84e-10 3cc2:X, 3cc4:X, 3cc7:X, 3cce:X, 3ccj:X, 3ccl:X, 3ccm:X, 3ccq:X, 3ccr:X, 3ccs:X, 3ccu:X, 3ccv:X, 3cd6:X, 3cma:X, 3cme:X, 3cpw:W, 3cxc:W, 3g4s:X, 3g6e:X, 3g71:X, 3i55:X, 3i56:X, 1jj2:W, 1k73:Y, 1k8a:Y, 1k9m:Y, 1kc8:Y, 1kd1:Y, 1kqs:W, 1m1k:Y, 1m90:Y, 1n8r:Y, 1nji:Y, 2otj:X, 2otl:X, 3ow2:W, 1q7y:Y, 1q81:Y, 1q82:Y, 1q86:Y, 2qa4:X, 2qex:X, 1qvf:W, 1qvg:W, 1s72:X, 1vq4:X, 1vq5:X, 1vq6:X, 1vq7:X, 1vq8:X, 1vq9:X, 1vqk:X, 1vql:X, 1vqm:X, 1vqn:X, 1vqo:X, 1vqp:X, 1w2b:W, 1yhq:X, 1yi2:X, 1yij:X, 1yit:X, 1yj9:X, 1yjn:X, 1yjw:X
4 8c3a:AE 110 85 0.3222 0.2636 0.3412 1.53e-09 8c3a:BY, 8cq7:AE, 8cq7:BY, 8cqw:AE, 8cqw:BY, 8cre:AE, 8cre:BY, 8oeq:AE, 8oeq:BY, 7pzy:AE, 7q08:AE, 7q0f:AE, 7q0p:AE, 7q0r:AE, 8q5i:AE
5 3j79:7 96 78 0.2778 0.2604 0.3205 9.85e-09 3jbn:A7, 3jbo:A7, 3jbp:A7, 8tpu:A7, 5umd:7
6 8br8:Le 100 81 0.3111 0.2800 0.3457 1.14e-08 8brm:Le, 8bsi:Le, 8bsj:Le, 8btd:Le, 8btr:Le, 8fru:d, 7pwg:d, 7pwo:d2
7 8hfr:dG 110 82 0.2778 0.2273 0.3049 1.50e-08 8aaf:Q, 8agt:Q, 8agu:Q, 8agv:Q, 8agw:Q, 8agx:Q, 8agz:Q, 5apn:d, 5apo:d, 7azy:n, 7b7d:LZ, 8bip:Ld, 8bjq:Ld, 8bn3:O1, 8bqd:BC, 8bqx:BC, 7bt6:d, 7btb:d, 8ccs:P, 8cdl:P, 8cdr:P, 8ceh:P, 8cf5:P, 8cg8:P, 8cgn:P, 8civ:P, 8cku:P, 8cmj:P, 5dat:O1, 5dat:o1, 5dc3:O1, 5dc3:o1, 5dge:O1, 5dge:o1, 5dgf:O1, 5dgf:o1, 5dgv:O1, 5dgv:o1, 6elz:d, 6em5:d, 8eub:Ad, 8evp:Ad, 8evq:Ad, 8evr:Ad, 8evs:Ad, 8evt:Ad, 8ewb:Ad, 8ewc:Ad, 5fci:O1, 5fci:o1, 5fcj:O1, 5fcj:o1, 6ft6:d, 5gak:f, 6gq1:d, 6gqb:d, 6gqv:d, 5h4p:d, 6hd7:f, 6hhq:AE, 6hhq:DF, 5i4l:O1, 5i4l:o1, 6i7o:BC, 6i7o:YC, 3j6x:71, 3j6y:71, 3j77:81, 3j78:81, 3jct:d, 5jcs:d, 5juo:IA, 5jup:IA, 5jus:IA, 5jut:IA, 5juu:IA, 8k2d:Ld, 8k82:Ld, 5lyb:O1, 5lyb:o1, 5m1j:d5, 6m62:d, 5mc6:BC, 5mei:AE, 5mei:DF, 7mpi:Ad, 7mpj:Ad, 6n8j:d, 6n8k:d, 6n8l:d, 6n8m:q, 6n8n:q, 6n8o:q, 7n8b:Ad, 7nac:d, 5ndg:O1, 5ndg:o1, 5ndv:O1, 5ndv:o1, 5ndw:O1, 5ndw:o1, 7nrc:Lf, 7nrd:Lf, 5obm:O1, 5obm:o1, 7of1:d, 7oh3:d, 7ohq:d, 7ohr:d, 7ohv:d, 6oig:d, 5on6:AE, 5on6:DF, 7osa:eL31, 7osm:eL31, 8p8m:RD, 8p8n:RD, 8p8u:RD, 8pfr:RD, 6q8y:BC, 6qik:d, 6qt0:d, 6qtz:d, 7r7a:d, 6r84:f, 6r86:f, 6r87:f, 6ri5:d, 7rr5:Ld, 6rzz:d, 6s05:d, 6s47:Af, 6snt:am, 6sv4:BC, 6sv4:YC, 6sv4:ZC, 6t4q:Ld, 5t62:q, 5t6r:q, 6t7i:Ld, 6t7t:Ld, 6t83:dy, 6t83:O, 5tbw:AE, 5tbw:DF, 6tb3:BC, 5tga:O1, 5tga:o1, 5tgm:O1, 5tgm:o1, 6tnu:BC, 7too:AL31, 7top:AL31, 7u0h:d, 4u3m:O1, 4u3m:o1, 4u3n:O1, 4u3n:o1, 4u3u:O1, 4u3u:o1, 4u4n:O1, 4u4n:o1, 4u4o:O1, 4u4o:o1, 4u4q:O1, 4u4q:o1, 4u4r:O1, 4u4r:o1, 4u4u:O1, 4u4u:o1, 4u4y:O1, 4u4y:o1, 4u4z:O1, 4u4z:o1, 4u50:O1, 4u50:o1, 4u51:O1, 4u51:o1, 4u52:O1, 4u52:o1, 4u53:O1, 4u53:o1, 4u55:O1, 4u55:o1, 4u56:O1, 4u56:o1, 4u6f:O1, 4u6f:o1, 7ug6:d, 7uoo:d, 7uqb:d, 7uqz:d, 7v08:d, 4v4b:BW, 4v6i:Bg, 4v7h:BW, 4v7r:Ba, 4v7r:Da, 4v88:Bd, 4v88:Dd, 4v8t:d, 4v8y:Bd, 4v8z:Bd, 8v87:d, 4v91:d, 6woo:d, 6xiq:d, 6xir:d, 8y0u:Ld, 6ylg:d, 6ylh:d, 6ylx:d, 6yly:d, 7z34:d, 6z6j:Ld, 6z6k:Ld, 7zpq:Bc, 7zrs:Bc, 7zs5:Be, 7zuw:Bc, 7zux:Ec, 7zw0:Lg
8 5it7:dd 106 57 0.2556 0.2170 0.4035 1.74e-08 6uz7:Bd
9 8rxh:Le 186 74 0.2778 0.1344 0.3378 2.57e-08 8a3w:e, 8a98:e, 6az3:e, 3jcs:e, 8ovj:e, 8rxx:Le, 5t2a:f
10 8etc:d 102 57 0.2444 0.2157 0.3860 3.64e-08 8esq:d, 8esr:d, 8etg:d, 8eti:d, 8etj:d, 8eug:d, 8eui:d
11 7z3n:Ld 119 82 0.3000 0.2269 0.3293 4.51e-08 8i9v:Ld, 8i9w:Ld, 8i9x:Ld, 8i9y:Ld, 8i9z:Ld, 8ia0:Ld, 7olc:Ld, 7old:Ld, 8oo0:Ld, 8pv1:Ld, 8pv2:Ld, 8pv3:Ld, 8pv4:Ld, 8pv5:Ld, 8pv6:Ld, 8pv7:Ld, 8pv8:Ld, 8pvk:Ld, 8pvl:Ld, 7z3o:Ld
12 7r81:f1 104 53 0.2333 0.2019 0.3962 4.79e-08
13 4v8m:Bh 188 72 0.2778 0.1330 0.3472 7.86e-08 8ova:Bh, 8ove:Bh
14 5t5h:h 150 69 0.2778 0.1667 0.3623 8.06e-08
15 4v6x:Cd 113 76 0.2778 0.2212 0.3289 8.81e-08 7a01:u2, 8a3d:X, 5aj0:Ad, 8b5l:d, 8b6c:d, 9bdl:AL31, 9bdn:AL31, 9bdp:AL31, 8bf9:d, 7bhp:Ld, 8bhf:Q1, 8bpo:c2, 8btk:Bd, 7cpu:Ld, 7cpv:Ld, 4d5y:d, 4d67:d, 6d90:d, 6d9j:d, 9f1b:Bd, 9f1c:Bd, 9f1d:Bd, 7f5s:Ld, 8fkv:LP, 8fkw:LP, 8fkx:LP, 8fky:LP, 8fkz:LP, 8fl2:LP, 8fl3:LP, 8fl4:LP, 8fl6:LP, 8fl7:LP, 8fl9:LP, 8fla:LP, 8flb:LP, 8flc:LP, 8fld:LP, 8fle:LP, 8flf:LP, 6frk:d, 6ftg:d, 6fti:d, 6ftj:d, 8g5y:Ld, 8g5z:Ld, 8g60:Ld, 8g61:Ld, 8g6j:Ld, 8glp:Ld, 6gz3:Ad, 6gz4:Ad, 6gz5:Ad, 6hcf:d3, 6hcj:d3, 6hcm:d3, 6hcq:d3, 8idt:j, 8idy:j, 8ie3:j, 8ifd:2X, 8ife:2X, 8ine:j, 8inf:j, 8ink:j, 6ip5:2X, 6ip6:2X, 6ip8:2X, 8ipd:j, 8ipx:j, 8ipy:j, 8ir1:j, 8ir3:j, 3j7o:d, 3j7p:d, 3j7q:d, 3j7r:d, 3j92:d, 3jag:d, 3jah:d, 3jai:d, 3jaj:d, 3jan:d, 8jdj:i, 8jdk:i, 8jdl:i, 8jdm:i, 8k2c:Ld, 5lks:Ld, 6lqm:T, 6lsr:T, 6lss:j, 7ls1:X2, 7ls2:X2, 6lu8:j, 5lzs:d, 5lzt:d, 5lzu:d, 5lzv:d, 5lzw:d, 5lzx:d, 5lzy:d, 5lzz:d, 7mdz:d, 6mtb:d, 6mtc:d, 6mtd:d, 6mte:d, 7nfx:d, 7nwg:d3, 7nwh:d, 7nwi:d, 7o7y:Bd, 7o7z:Bd, 7o80:Bd, 7o81:Bd, 7obr:d, 8ohd:Ld, 8oj0:Ld, 8oj5:Ld, 8oj8:Ld, 6ole:e, 6olf:e, 6olg:Ad, 6oli:e, 6olz:Ad, 6om0:e, 6om7:e, 7ow7:X, 7oya:d1, 7oyb:d1, 7oyc:d1, 7oyd:d, 8p2k:Bd, 6p5i:Ad, 6p5j:Ad, 6p5k:Ad, 6p5n:Ad, 8q7z:Bd, 8q87:Bd, 8qfd:d, 7qgg:e, 8qoi:Ld, 7qvp:Ld, 7qvp:Md, 7qwq:d, 7qwr:d, 7qws:d, 6qzp:Ld, 6r5q:d, 6r6g:d, 6r6p:d, 6r7q:d, 8rjb:d, 8rjc:d, 8rjd:d, 8scb:d, 6sgc:d2, 6swa:b, 5t2c:X, 6t59:d3, 7tm3:d, 7toq:AL31, 7tor:AL31, 7tut:d, 7ucj:d, 7uck:d, 4ug0:Ld, 4ujc:Bd, 4ujd:Ad, 4uje:Cd, 4v5z:Bx, 6w6l:e, 6xa1:Ld, 7xnx:Ld, 7xny:Ld, 8xsx:Ld, 8xsy:Ld, 8xsz:Ld, 6y0g:Ld, 8y0w:Ld, 8y0x:Ld, 6y2l:Ld, 6y57:Ld, 6y6x:Ld, 8yoo:Ld, 8yop:Ld, 6z6l:Ld, 6z6m:Ld, 6z6n:Ld, 7zjw:Lg, 7zjx:Lg, 6zm7:Ld, 6zme:Ld, 6zmi:Ld, 6zmo:Ld, 6zvk:u2
16 6zj3:Lt 111 67 0.2444 0.1982 0.3284 1.58e-07
17 4v6w:Cd 111 42 0.2111 0.1712 0.4524 6.18e-07 6xu6:Cd, 6xu7:Cd, 6xu8:Cd
18 7qep:O1 108 83 0.2667 0.2222 0.2892 2.44e-06
19 6zu5:LDD 103 65 0.2000 0.1748 0.2769 3.69e-06
20 8p5d:LDD 109 70 0.2667 0.2202 0.3429 9.47e-06 8p60:LDD, 8p60:KDD, 7qca:LDD
21 8hku:L31E 75 49 0.2333 0.2800 0.4286 1.03e-05 8hkv:L31E, 8hky:L31E, 8hkz:L31E, 8hl1:L31E, 8hl2:L31E, 8hl3:L31E, 8hl4:L31E, 8hl5:L31E
22 7nad:d 72 64 0.2333 0.2917 0.3281 1.04e-05 7r72:d
23 5xxb:c 107 53 0.2111 0.1776 0.3585 1.33e-05
24 9bh5:Cd 105 57 0.2111 0.1810 0.3333 2.62e-05 9cai:Cd
25 7qiw:f 110 60 0.2333 0.1909 0.3500 3.81e-05 8azw:Q, 8b2l:Q3, 2go5:6, 2j37:6, 7qiz:f
26 4v8p:BW 110 75 0.2333 0.1909 0.2800 2.10e-04 4v8p:CW, 4v8p:EW, 4v8p:GW
27 4v3p:Lg 120 52 0.1778 0.1333 0.3077 0.002 8ip8:SA, 8ipa:SA, 8ipb:SA, 8jiv:Cd, 4v7e:Cd
28 5xy3:d 99 41 0.1667 0.1515 0.3659 0.079
29 5cb5:R 173 41 0.1778 0.0925 0.3902 0.74 5cb3:A, 5cb5:A, 5cb5:B, 5cb5:C, 5cb5:D, 5cb5:E, 5cb5:F, 5cb5:G, 5cb5:H, 5cb5:I, 5cb5:J, 5cb5:K, 5cb5:L, 5cb5:M, 5cb5:N, 5cb5:O, 5cb5:P, 5cb5:Q, 5cms:R, 5cms:A, 5cms:B, 5cms:C, 5cms:D, 5cms:E, 5cms:F, 5cms:G, 5cms:H, 5cms:I, 5cms:J, 5cms:K, 5cms:L, 5cms:M, 5cms:N, 5cms:O, 5cms:P, 5cms:Q
30 7naf:d 44 46 0.1778 0.3636 0.3478 1.1
31 7mvv:A 1542 48 0.1556 0.0091 0.2917 1.4 4knh:B, 7tbi:I1, 7tbi:I2, 7tbj:I1, 7tbj:I2, 7tbj:I3, 7tbj:I4, 7tbj:I5, 7tbk:I1, 7tbk:I2, 7tbk:I3, 7tbk:I4, 7tbk:I5, 7tbl:I1, 7tbl:I2, 7tbl:I3, 7tbl:I4, 7tbl:I5, 7tbm:I1, 7tbm:I2, 7tbm:I3, 7tbm:I4, 7tbm:I5
32 4kis:A 315 44 0.1667 0.0476 0.3409 3.1 6dnw:A, 4kis:B, 4kis:C
33 4qc6:A 179 28 0.1111 0.0559 0.3571 5.2 4qc6:B
34 4p42:A 455 42 0.1556 0.0308 0.3333 6.7 4npk:A
35 4p42:B 431 42 0.1556 0.0325 0.3333 7.5
36 6l8h:A 466 36 0.1667 0.0322 0.4167 8.4 6l8h:B, 6l8h:C, 6l8h:D
37 6gaw:Bv 135 75 0.2444 0.1630 0.2933 8.9 5aj4:Bv, 6gb2:Bv, 7nqh:Bv, 7nql:Bv, 7nsh:Bv, 7nsi:Bv, 7nsj:Bv, 8oin:Bg, 8oiq:Bg, 6ydp:Bv, 6ydw:Bv

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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