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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KAFAKFPSSASISPNPFTVSIPDEQLDDLKTLVRLSKIAPPTYESLQADGRFGITSEWLTTMREKWLSEFDWRPFEARLN
SFPQFTTEIEGLTIHFAALFSEREDAVPIALLHGWPGSFVEFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGPPLDK
DFGLMDNARVVDQLMKDLGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCAMRAPPEGPSIESLSAAEKEGIARME
KFMTDGLAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLYWLTESFPRAIHTYRETTPMLQ
KELYIHKPFGFSFFPKDLCPVPRSWIATTGNLVFFRDHAEGGHFAALERPRELKTDLTAFVEQVW

The query sequence (length=385) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3g0i:A 385 385 1.0000 1.0000 1.0000 0.0 3g0i:B
2 5f4z:D 391 390 0.3403 0.3350 0.3359 2.73e-55 5f4z:A, 5f4z:B, 5f4z:C, 5f4z:E
3 4k2a:C 299 85 0.0701 0.0903 0.3176 0.015 4k2a:A, 4k2a:B, 4k2a:D
4 8kie:y 363 80 0.0649 0.0689 0.3125 0.11
5 3r3z:A 304 100 0.0727 0.0921 0.2800 0.19 6gxd:A, 6gxt:A, 5k3b:A, 5k3e:A, 6qhp:A, 6qhp:B, 6qhq:A, 6qhs:A, 6qht:A, 6qhu:A, 6qhv:A, 6qhw:A, 6qhw:B, 6qhx:A, 6qhx:B, 6qhy:A, 6qhz:A, 6qi0:A, 6qi0:B, 6qi1:A, 6qi2:A, 6qi3:A, 6qkt:A, 6qku:A, 6qkw:B, 3r3v:A, 3r3w:A, 3r3x:A, 3r3z:B, 3r3z:C, 3r3z:D, 5swn:A, 5t4t:B, 5t4t:A
6 4b9e:A 297 129 0.0909 0.1178 0.2713 0.49 4bau:A, 4bb0:A
7 4uhf:A 278 124 0.0831 0.1151 0.2581 2.1 4uhd:A, 4uhe:A
8 6ofs:A 905 64 0.0545 0.0232 0.3281 2.3
9 3a31:A 465 133 0.0805 0.0667 0.2331 3.7 3a32:A
10 1gt7:A 274 37 0.0416 0.0584 0.4324 4.2 1gt7:B, 1gt7:C, 1gt7:D, 1gt7:E, 1gt7:F, 1gt7:G, 1gt7:H, 1gt7:I, 1gt7:J, 1gt7:K, 1gt7:L, 1gt7:M, 1gt7:N, 1gt7:O, 1gt7:P, 1gt7:Q, 1gt7:R, 1gt7:S, 1gt7:T, 1ojr:A, 2uyu:A, 2uyu:E, 2uyv:A, 2uyv:B, 2uyv:C, 2uyv:D, 2v29:B, 2v29:A, 2v2a:A, 2v2b:A, 2v9e:A, 2v9e:B, 2v9f:A, 2v9g:A, 2v9g:B, 2v9g:C, 2v9g:D, 2v9i:A, 2v9i:B, 2v9l:A, 2v9m:A, 2v9m:B, 2v9n:A, 2v9n:B, 2v9n:C, 2v9n:D, 2v9o:A, 2v9o:E
11 6n3k:A 336 112 0.0753 0.0863 0.2589 4.8 6n3z:A, 6n5f:A, 6n5g:A, 6n5h:A, 5uro:A
12 3b12:A 294 90 0.0675 0.0884 0.2889 4.8 3b12:B, 1y37:A, 1y37:B
13 5h3h:B 269 93 0.0649 0.0929 0.2688 5.2 5h3h:A
14 6p7e:C 672 71 0.0494 0.0283 0.2676 7.9 1sl0:A, 1sl0:C
15 8u87:A 621 63 0.0519 0.0322 0.3175 9.5 8u7y:A, 8u7y:B, 8u85:A, 8u85:C, 8u86:A, 8u86:C, 8u87:C
16 8qcl:A 390 57 0.0442 0.0436 0.2982 10.0 8qcl:B, 8qef:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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