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BioLiP
>protein
KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5t01:A 62 58 1.0000 0.9355 1.0000 4.79e-33 1a02:J, 1fos:F, 1fos:H, 5fv8:D, 2h7h:A, 2h7h:B, 1jnm:A, 1jnm:B, 1s9k:E, 5t01:B
2 5vpe:D 67 58 0.8793 0.7612 0.8793 4.76e-29 5vpe:B, 5vpf:B, 5vpf:D
3 5fv8:E 37 32 0.5345 0.8378 0.9688 5.10e-15
4 1t2k:D 61 50 0.3966 0.3770 0.4600 1.22e-06
5 1ysa:C 57 50 0.3621 0.3684 0.4200 7.75e-04 1dgc:A, 2dgc:A, 1ysa:D
6 7x5e:B 106 38 0.2931 0.1604 0.4474 0.001 7x5e:F, 7x5f:B, 7x5f:F, 7x5g:B, 7x5g:F
7 1dh3:A 55 35 0.2759 0.2909 0.4571 0.15 1dh3:C, 5zk1:A, 5zko:A, 5zko:C
8 1gd2:E 65 54 0.3276 0.2923 0.3519 0.33 1gd2:F, 1gd2:G, 1gd2:H
9 6iox:A 339 46 0.2759 0.0472 0.3478 1.5 6iox:B
10 7s7b:F 352 27 0.1897 0.0312 0.4074 3.0 7s7b:B, 7s7c:B
11 6co9:A 295 27 0.2069 0.0407 0.4444 3.0 6coj:A
12 6zz6:B 423 56 0.2759 0.0378 0.2857 3.2
13 5e9a:B 684 33 0.1724 0.0146 0.3030 5.5 5e9a:A, 5e9a:C, 5e9a:D, 5e9a:E, 5e9a:F
14 4irq:C 249 22 0.1897 0.0442 0.5000 6.0 4irp:A, 4irq:A, 4irq:B, 4irq:D
15 5jk5:A 400 31 0.1897 0.0275 0.3548 6.5 5jk5:B, 5jk6:A, 5jk6:B, 5jk8:A, 5jk8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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