Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KAELKGQVKDIVEESGVDTSKLTNDQINELNKINFSKEAKSGTQLTYNDFKKIAKTLIEQDARYAIPFFNASKIKNMPAA
KTLDAQSGKVEDLEIWNSWPVQDAKTGYVSNWNGYQLVIGMMGVPNVNDNHIYLLYNKYGDNDFNHWKNAGPIFGLGTPV
IQQWSGSATLNKDGSIQLYYTKVDTSDNNTNHQKLASATVYLNLEKDQDKISIAHVDNDHIVFEGDGYHYQTYDQWKETN
KGADNIAMRDAHVIDDDNGNRYLVFEASTGTENYQGDDQIYQWLNYGGTNKDNLGDFFQILSNSDIKDRAKWSNAAIGII
KLNDDVKNPSVAKVYSPLISAPMVSDEIERPDVVKLGNKYYLFAATRLNRGSNDDAWMATNKAVGDNVAMIGYVSDNLTH
GYVPLNESGVVLTASVPANWRTATYSYYAVPVEGRDDQLLITSYITNRGEVAGKGMHATWAPSFLLQINPDNTTTVLAKM
TNQGDWIWDDSSENPDMMGVLEKDAPNSAALPGEWGKPVDWDLIGGYNLKPHQ

The query sequence (length=533) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2yfr:A 533 533 0.9981 0.9981 0.9981 0.0 2yfs:A, 2yft:A
2 3om2:A 448 441 0.3302 0.3929 0.3991 2.88e-87 3om4:A, 3om4:B, 3om4:C, 3om4:D, 3om5:A, 3om5:B, 3om5:C, 3om5:D, 3om6:A, 3om6:B, 3om6:C, 3om6:D, 3om7:C, 3om7:A, 3om7:B, 3om7:D
3 3byj:A 440 466 0.3246 0.3932 0.3712 1.83e-83 3byk:A, 3byn:A, 1oyg:A, 1pt2:A, 6pwq:A, 6pwq:B, 2vdt:A, 6vhq:A, 6vhq:B
4 7bj4:A 406 355 0.1670 0.2192 0.2507 3.59e-19 7bj4:B, 7bj4:C, 7bj4:D, 7bj4:E, 7bj4:F, 7bj4:G, 7bj4:H, 7bj4:I, 7bj4:J, 7bjc:A, 7bjc:B, 7bjc:C, 7bjc:D, 7bjc:E, 7bjc:F, 7bjc:G, 7bjc:H, 7bjc:I, 7bjc:J
5 7fdz:A 417 408 0.1989 0.2542 0.2598 1.29e-17
6 7oso:A 412 380 0.1820 0.2354 0.2553 3.39e-15 4d47:A, 4d47:B, 4d47:C, 4d47:D, 4d47:E, 4d47:F, 4d47:G, 4d47:H, 6frw:A, 6rv5:A
7 8i2r:A 477 440 0.1970 0.2201 0.2386 1.38e-13 6m0e:A
8 8qj5:A 412 373 0.1614 0.2087 0.2306 1.22e-11
9 3vss:A 494 380 0.1689 0.1822 0.2368 3.57e-10
10 1gye:B 315 69 0.0394 0.0667 0.3043 0.34
11 5zba:A 360 130 0.0563 0.0833 0.2308 0.95
12 1g71:A 344 59 0.0300 0.0465 0.2712 1.0 1g71:B
13 4m59:A 687 37 0.0338 0.0262 0.4865 1.9 4m59:B, 4oe1:A, 4oe1:B
14 6ixx:A 463 109 0.0563 0.0648 0.2752 2.8 1g9k:A, 1h71:P, 1o0q:A, 1o0t:A, 1om6:A, 1om7:A, 1om8:A, 1omj:A, 3u1r:A
15 9at8:L 121 63 0.0338 0.1488 0.2857 2.9
16 5j5t:A 298 54 0.0300 0.0537 0.2963 3.9
17 5jp0:A 745 42 0.0281 0.0201 0.3571 5.4 5jp0:B
18 6k4y:I 88 41 0.0281 0.1705 0.3659 7.0
19 7bz3:C 335 130 0.0694 0.1104 0.2846 7.1 7bz3:D
20 1bbp:A 173 70 0.0413 0.1272 0.3143 7.5 1bbp:B, 1bbp:C, 1bbp:D
21 8bja:A 1563 58 0.0338 0.0115 0.3103 7.5
22 8p82:A 1596 58 0.0338 0.0113 0.3103 7.6 8p82:B
23 7zol:B 1702 37 0.0244 0.0076 0.3514 9.9 7zoq:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218