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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IYTKNGDKGQTRIIQILYKNDPRVAAYGEVNELNSWVGYTKSLINSHTQVLSNELEEIQQLLFDCGHDLATPRHSFKFKQ
EQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQINQDVLIFINRLSDYFFAAARY
ANYLEQQPDMLYR

The query sequence (length=173) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ci1:A 188 179 0.9942 0.9149 0.9609 4.29e-125 3ci3:A, 3ci4:A, 3gah:A, 3gai:A, 3gaj:A, 2nt8:A, 2r6t:A, 2r6t:B, 2r6x:A, 2r6x:B
2 3ke5:A 182 175 0.4740 0.4505 0.4686 3.80e-47 3ke5:C, 3ke5:B
3 7rut:E 187 174 0.3988 0.3690 0.3966 8.18e-37 6d5k:A, 6d5k:C, 6d5k:B, 6d5x:A, 6d5x:C, 6d5x:B, 2idx:A, 2idx:C, 2idx:B, 7rut:D, 7rut:C, 7rut:F, 7rut:B, 7rut:A, 7ruu:A, 7ruu:C, 7ruu:B, 7ruu:D, 7ruv:A, 7ruv:D, 7ruv:B, 7ruv:C
4 2zhz:B 174 174 0.3699 0.3678 0.3678 1.04e-28 2zhz:A, 2zhz:C
5 8d32:A 186 182 0.3931 0.3656 0.3736 4.37e-26 6wgs:A, 6wgv:A, 6wh5:A, 6wh5:B, 6wh5:C
6 2eix:A 243 59 0.0867 0.0617 0.2542 0.38 2eix:B
7 4ybh:A 302 49 0.0867 0.0497 0.3061 4.4 4p2y:A
8 7dbe:B 332 66 0.1040 0.0542 0.2727 6.0 7dbe:A, 7dbe:C, 7dbe:D, 7wud:B, 7wud:A, 7wud:C, 7wud:D
9 6ndl:A 323 84 0.1387 0.0743 0.2857 7.5 6apw:A, 6aqq:A, 4dq2:A, 8eni:A, 4ha8:A, 6oru:A, 3rir:A, 3rkw:A, 3rky:A, 3v7c:A, 3v7r:A, 3v7s:A, 3v8k:A, 3v8l:A
10 8u3k:E 669 112 0.1387 0.0359 0.2143 8.7 8u0j:A
11 9ezy:B 657 112 0.1387 0.0365 0.2143 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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