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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
IYPDEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKA
FCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGS
FDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCD
GQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP

The query sequence (length=284) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4i42:A 285 284 1.0000 0.9965 1.0000 0.0 4els:A, 4els:B, 4els:C, 4els:D, 4els:E, 4els:F, 4elw:A, 4elw:B, 4elw:C, 4elw:D, 4elw:E, 4elw:F, 4elx:A, 4elx:B, 4elx:C, 4elx:D, 4elx:F, 3h02:A, 3h02:B, 3h02:C, 3h02:D, 3h02:E, 3h02:F, 4i42:F, 4i42:B, 4i42:D, 4i42:C, 4i42:E, 4i42:G, 4i42:L, 4i42:H, 4i42:J, 4i42:I, 4i42:K, 3t88:A, 3t88:E, 3t88:B, 3t88:F, 3t88:C, 3t88:D
2 4i4z:A 275 278 0.6514 0.6727 0.6655 7.04e-133 4eml:A, 4eml:B, 4eml:C, 4eml:D, 4eml:E, 4eml:F, 4i4z:F, 4i4z:B, 4i4z:D, 4i4z:C, 4i4z:E, 4i4z:G, 4i4z:H, 4i4z:I, 4i52:A, 4i52:B, 4i52:C, 4i52:D, 4i52:E, 4i52:F, 4i52:G, 4i52:H, 4i52:I
3 2uzf:A 260 271 0.6021 0.6577 0.6310 1.15e-125
4 4qii:B 301 285 0.4789 0.4518 0.4772 3.45e-78 1q51:B, 4qii:A, 4qii:F, 4qii:E, 4qii:C, 4qii:D, 4qii:G, 4qii:L, 4qii:H, 4qii:K, 4qii:I, 4qii:J, 4qij:A, 4qij:F, 4qij:B, 4qij:E, 4qij:C, 4qij:D, 4qij:G, 4qij:K, 4qij:H, 4qij:J, 4qij:I, 4qij:L
5 1rjn:B 275 275 0.4542 0.4691 0.4691 1.07e-74 1q51:A, 1q51:C, 1q51:D, 1q51:E, 1q51:F, 1q51:G, 1q51:H, 1q51:I, 1q51:J, 1q51:K, 1q51:L, 1rjm:A, 1rjm:B, 1rjm:C, 1rjn:A, 1rjn:C, 3t8a:B, 3t8a:C
6 5zai:C 259 272 0.3134 0.3436 0.3272 2.37e-37 5zai:A, 5zai:B, 5zai:E
7 3h81:A 256 261 0.3310 0.3672 0.3602 1.03e-35 3h81:C, 3q0g:C, 3q0g:D, 3q0g:F, 3q0j:C, 3q0j:F
8 2hw5:C 260 262 0.3028 0.3308 0.3282 9.57e-32
9 1dub:A 260 262 0.2993 0.3269 0.3244 2.48e-30 1dub:B, 1dub:C, 1dub:E, 1dub:F, 1dub:D, 2dub:A, 2dub:B, 2dub:C, 2dub:E, 2dub:F, 2dub:D, 1ey3:A, 1ey3:B, 1ey3:C, 1ey3:D, 1ey3:E, 1ey3:F, 1mj3:A, 1mj3:B, 1mj3:C, 1mj3:E, 1mj3:F
10 2vss:B 247 205 0.2535 0.2915 0.3512 1.69e-29 6l3p:A, 6l3p:B, 2vss:D, 2vss:E, 2vss:F, 2vsu:A, 2vsu:B, 2vsu:D, 2vsu:E, 2vsu:F
11 6p5u:E 246 213 0.2465 0.2846 0.3286 9.94e-29 6p5u:A, 6p5u:B, 6p5u:C, 6p5u:D, 6p5u:F
12 5jbx:B 261 249 0.2711 0.2950 0.3092 2.45e-27 5jbx:A
13 3t3w:F 248 214 0.2711 0.3105 0.3598 8.40e-26 3t3w:A, 3t3w:B, 3t3w:C, 3t3w:D, 3t3w:E
14 6slb:AAA 257 255 0.2641 0.2918 0.2941 1.92e-25 6sla:AAA, 6sla:BBB, 6sla:CCC, 6sla:DDD, 6sla:EEE, 6sla:FFF
15 3ome:C 247 215 0.2570 0.2955 0.3395 2.44e-24 3ome:A, 3ome:B, 3ome:D, 3ome:E, 3ome:F
16 5duf:A 245 251 0.2535 0.2939 0.2869 1.49e-23 5dtw:A, 5dtw:D, 5du4:A, 5du6:A, 5du6:B, 5du6:C, 5du8:A, 5du8:B, 5du8:C, 5duc:A, 5duc:B, 5duc:C
17 1ef9:A 261 257 0.2465 0.2682 0.2724 2.13e-23 6n92:A, 6n92:B, 6n92:C, 6n92:D, 6n92:E, 6n92:F, 6n93:A, 6n93:B, 6n93:C, 6n93:D, 6n93:E, 6n93:F, 6n94:A, 6n94:B, 6n94:C, 6n94:D, 6n94:E, 6n94:F, 6n95:A, 6n95:B, 6n95:C, 6n95:D, 6n95:E, 6n95:F, 6n96:A, 6n96:B, 6n96:C, 6n96:D, 6n96:E, 6n96:F, 6n97:A, 6n97:B, 6n97:C, 6n97:D, 6n97:E, 6n97:F
18 3p85:A 224 226 0.2500 0.3170 0.3142 4.29e-21
19 1jxz:B 269 208 0.2289 0.2416 0.3125 4.99e-21 1jxz:A, 1jxz:C, 1nzy:A, 1nzy:B, 1nzy:C
20 7xwt:B 277 217 0.2007 0.2058 0.2627 7.38e-17 7xwv:A, 7xwv:B
21 3pe8:A 219 204 0.2324 0.3014 0.3235 1.97e-16
22 2a81:A 235 216 0.2042 0.2468 0.2685 8.11e-16
23 4izc:B 266 212 0.1725 0.1842 0.2311 1.15e-13 4izc:A, 4izd:A, 4izd:B
24 3bpt:A 362 142 0.1444 0.1133 0.2887 1.94e-13
25 7bor:A 247 172 0.1761 0.2024 0.2907 2.90e-13 7bor:C
26 6ysw:A 707 229 0.2007 0.0806 0.2489 1.89e-11
27 4jvt:A 257 189 0.1831 0.2023 0.2751 2.64e-09 4omr:A
28 6iun:B 692 277 0.2324 0.0954 0.2383 3.30e-09 6iun:A
29 6eqo:A 1804 193 0.1655 0.0261 0.2435 4.87e-09 6eqo:B
30 6tnm:A 719 218 0.1972 0.0779 0.2569 1.62e-08
31 3zwa:A 727 196 0.1831 0.0715 0.2653 1.95e-08 5mgb:A, 5mgb:B, 5omo:A, 5omo:B, 2x58:A, 2x58:B, 6z5f:AAA, 6z5f:BBB, 6z5o:AAA, 6z5v:AAA, 6z5v:BBB, 6zib:AAA, 6zib:BBB, 6zic:AAA, 6zic:BBB, 3zw9:A, 3zw9:B, 3zwa:B, 3zwb:A, 3zwb:B, 3zwc:A, 3zwc:B
32 8oqs:B 735 212 0.2077 0.0803 0.2783 8.52e-08 4b3i:A, 4b3i:B, 4b3j:A, 4b3j:B, 7o4s:A, 7o4s:B, 7o4t:A, 7o4t:B, 7o4u:A, 7o4u:B, 7o4v:B, 7o4v:A, 8opu:A, 8opu:B, 8opv:A, 8opv:B, 8oql:A, 8oql:B, 8oqn:A, 8oqn:B, 8oqo:A, 8oqo:B, 8oqp:A, 8oqp:B, 8oqq:A, 8oqq:B, 8oqr:A, 8oqr:B, 8oqs:A, 8oqt:B, 8oqt:A, 8oqu:A, 8oqu:B, 8oqv:A, 8oqv:B, 8pf8:A, 8pf8:B
33 1szo:D 251 230 0.1901 0.2151 0.2348 1.68e-07 1szo:A, 1szo:B, 1szo:C, 1szo:E, 1szo:F, 1szo:G, 1szo:H, 1szo:I, 1szo:J, 1szo:K, 1szo:L
34 2j5s:A 250 221 0.1690 0.1920 0.2172 2.47e-07 2j5s:B
35 1wdl:A 715 233 0.1972 0.0783 0.2403 3.42e-07 2d3t:A, 2d3t:B, 1wdk:A, 1wdk:B, 1wdl:B, 1wdm:A, 1wdm:B
36 3rrv:B 254 210 0.2007 0.2244 0.2714 4.15e-07 3rrv:A, 3rrv:C, 3rrv:D, 3rrv:E, 3rrv:F
37 4hdt:A 340 97 0.1127 0.0941 0.3299 7.96e-07
38 1xx4:A 254 187 0.1585 0.1772 0.2406 4.93e-06
39 1sg4:B 258 181 0.1514 0.1667 0.2376 2.46e-05
40 5kag:D 423 267 0.2254 0.1513 0.2397 6.46e-05 5kag:A, 5kag:B, 5kag:C, 5kag:E, 5kag:F, 5kag:G, 5kag:H, 5kag:I, 5kag:J, 5kag:K, 5kag:L, 5kah:A, 5kah:B, 5kah:C, 5kah:D, 5kah:E, 5kah:F, 5kah:G, 5kah:H, 5kah:I, 5kah:J, 5kah:K, 5kah:L, 5kaj:A, 5kaj:B, 5kaj:C, 5kaj:D, 5kaj:E, 5kaj:F, 5kaj:G, 5kaj:H, 5kaj:I, 5kaj:J, 5kaj:K, 5kaj:L, 2np9:A, 2np9:B, 2np9:C, 2pg8:A, 2pg8:B, 2pg8:C, 4ylh:A, 4ylh:B, 4ylh:C, 4ylh:D, 4ylh:E, 4ylh:F, 4ylh:G, 4ylh:H, 4ylh:I, 4ylh:J, 4ylh:K, 4ylh:L
41 6j0p:A 564 208 0.1725 0.0869 0.2356 3.12e-04 6j0p:B, 6j1e:A, 6j1f:A, 6j1f:B, 6j1g:A, 6j1i:A, 6j1j:A
42 4fnb:A 232 126 0.1232 0.1509 0.2778 0.27 4fn8:A, 4fnd:A
43 6f72:A 548 35 0.0528 0.0274 0.4286 2.7 6f73:A, 6f73:B
44 6n2n:B 291 32 0.0528 0.0515 0.4688 4.1 6n2n:D, 6n2o:B, 6n2o:D
45 6hiv:Cv 1059 136 0.1056 0.0283 0.2206 9.5 6hiw:Cv, 6hiy:Cv, 7pub:Cv

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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