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BioLiP
>protein
IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKL
YLQKFRE

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4awl:B 92 87 1.0000 0.9457 1.0000 2.25e-61 7ah8:A, 7ah8:C, 6qmp:B, 6qmq:B, 6qms:B, 8qu2:B, 8qu3:B, 8qu4:B
2 7aw7:B 92 86 0.7586 0.7174 0.7674 1.40e-47 7aw9:B, 4g91:B, 4g92:B, 6y35:B, 6y36:B, 6y37:B, 6y39:B, 6y39:E, 6y39:H
3 6r2v:B 93 86 0.7126 0.6667 0.7209 6.80e-46 7cvo:B, 7cvq:B, 7cvq:G, 7cvq:L, 7cvq:Q
4 7c9o:B 85 82 0.6437 0.6588 0.6829 2.60e-40
5 1jfi:B 135 84 0.3678 0.2370 0.3810 2.47e-16
6 4wzs:B 113 74 0.3103 0.2389 0.3649 2.28e-10
7 1a7w:A 68 64 0.2644 0.3382 0.3594 2.52e-05 5t5k:A, 5t5k:B, 5t5k:C, 5t5k:D, 5t5k:E, 5t5k:F
8 7aw9:C 118 65 0.2299 0.1695 0.3077 0.016 7aw7:C, 4g91:C, 4g92:C, 6y35:C, 6y36:C, 6y37:C, 6y39:C, 6y39:F, 6y39:I
9 6qmq:C 84 72 0.2414 0.2500 0.2917 0.12 7ah8:B, 7ah8:D, 4awl:C, 6qmp:C, 6qms:C, 8qu2:C, 8qu3:C, 8qu4:C
10 6so9:A 112 35 0.1609 0.1250 0.4000 1.9
11 1yfr:A 448 77 0.2299 0.0446 0.2597 2.2 1yfr:B, 1yfs:A, 1yfs:B, 1ygb:A
12 7d69:B 78 54 0.1149 0.1282 0.1852 3.3 7d69:F
13 7d69:D 96 41 0.1609 0.1458 0.3415 3.7 7d69:H
14 8je1:A 675 56 0.1379 0.0178 0.2143 5.0
15 8sq0:A 1402 38 0.1724 0.0107 0.3947 5.6 8sq0:B, 8sql:A, 8sqm:A
16 6kxv:E 95 67 0.1839 0.1684 0.2388 5.6 6kxv:A
17 7vax:F 471 80 0.2184 0.0403 0.2375 8.2 3a5c:E, 8gxw:E, 8gxx:E, 6r0w:E, 6r0y:D, 6r10:F, 7val:E, 7van:E, 7vap:E, 7vaq:E, 7var:E, 7vas:E, 7vat:E, 7vav:E, 7vaw:E, 7vay:E, 7vb0:E, 3w3a:E, 3w3a:M
18 7vfs:A 1266 45 0.1149 0.0079 0.2222 8.9 7vfu:A, 7vfv:A, 7vfw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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