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BioLiP
>protein
IVYGDYNNDGNVDALDFAGLKKYIMAAYVKNLDVNLDNEVNSTDLAILKKYLLGMV

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2vn6:B 64 59 0.9286 0.8125 0.8814 2.34e-28 2vn5:B, 2vn5:D
2 1daq:A 71 56 0.4643 0.3662 0.4643 7.89e-11 1dav:A, 2mte:A
3 4fl4:A 68 61 0.4464 0.3676 0.4098 1.34e-09 4fl4:D, 4fl4:G, 4fl4:J
4 3ul4:B 63 61 0.4643 0.4127 0.4262 1.62e-05
5 5nrk:B 68 61 0.3750 0.3088 0.3443 1.73e-05 5nrk:D, 5nrm:B
6 5nrk:B 68 30 0.1964 0.1618 0.3667 1.2 5nrk:D, 5nrm:B
7 2ccl:B 62 62 0.3036 0.2742 0.2742 3.01e-04 2ccl:D, 1ohz:B
8 4dh2:B 72 63 0.4286 0.3333 0.3810 5.38e-04 4dh2:D
9 8x3a:A 151 56 0.4107 0.1523 0.4107 0.001 8x39:A, 8x39:B
10 8x3a:A 151 61 0.3036 0.1126 0.2787 3.4 8x39:A, 8x39:B
11 5lxv:B 65 57 0.3393 0.2923 0.3333 0.001 5lxv:D
12 6kg9:A 67 56 0.3393 0.2836 0.3393 0.035 6kgc:B, 6kgd:B, 6kge:D, 6kge:B, 6kgf:D, 6kgf:B
13 2ozn:B 131 50 0.2500 0.1069 0.2800 0.16
14 6s7o:A 656 30 0.1786 0.0152 0.3333 0.66 6ftg:5, 6fti:5, 6ftj:5, 8pn9:A
15 4fl4:I 309 54 0.2857 0.0518 0.2963 0.90 2b59:B, 4fl4:C, 4fl4:F, 4fl4:L, 5g5d:B, 3kcp:A
16 3bq5:A 709 37 0.2143 0.0169 0.3243 1.7
17 1t7l:A 734 37 0.2143 0.0163 0.3243 1.7 3bq5:B, 3bq6:A, 3bq6:B, 1t7l:B, 1xdj:A, 1xdj:B, 1xpg:A, 1xpg:B, 1xr2:A, 1xr2:B
18 2y3n:B 60 49 0.3036 0.2833 0.3469 2.7
19 6rb7:A 305 33 0.2143 0.0393 0.3636 2.9 6rb7:B, 6rb7:E, 6rb7:F, 6rd1:A, 6rd1:B
20 5m0y:B 157 25 0.1786 0.0637 0.4000 4.8 5k39:B
21 7yca:3 227 20 0.1786 0.0441 0.5000 5.7
22 1sl6:A 168 16 0.1429 0.0476 0.5000 6.2 1k9j:A, 1sl6:B, 1sl6:C, 1sl6:D, 1sl6:E, 1sl6:F, 1xph:A
23 7d18:A 293 24 0.1429 0.0273 0.3333 6.7
24 5n5p:B 87 20 0.1786 0.1149 0.5000 7.2 5n5p:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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