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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IVVGNGVLGLSVGVEIARTRPDVRVTLLGKPARQYGATPAAGAMLGAFGEVTAHALASEHGRKKHALAVQAQRLWPEWIE
SLEATGTAADGRIKTADDTVVLLNTVGHSALDDANFAAVLTALKEANAPHEEIAVESVDWIDPDPNSRPLRALHIEGEGS
VDSGILLAALERSFLQAGGRLHPVDATEIVVTDDGDFLPAGHVVVAAGARSQRLVAALPGLAHRIPRIYDGVGVSALVDT
WDGSGPATVLRTSNRAFACGLHLVPRAGGSVYIGATNAVCLEPRGAASIEETVFLFNCATHQLHRGLNGSELRKVQVGSR
PAPIDGFPLIGGTSLWMLSGTYRDGLHMSPLLARHVVSLMDGGTGVDGLREFRPERDLISAWSREEILDDVVRHTMATGY
EFPWRLPLEWPHMMETFLQGPFAELADRLSDTYTPPADLMTAIMFSEREQQDELIAYYADVHREWH

The query sequence (length=466) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8gri:F 482 478 0.9979 0.9647 0.9728 0.0 8gri:A, 8gri:B, 8gri:D, 8gri:C, 8gri:E, 8gri:G, 8gri:H, 7xqa:A, 7xqa:B, 7xqa:C, 7xqa:D, 7xqa:E, 7xqa:F, 7xqa:G, 7xqa:H, 7xx0:A, 7xx0:B, 7xx0:C, 7xx0:D, 7xx0:E, 7xx0:G, 7xx0:F, 7xx0:H, 7xxc:A, 7xxc:C, 7xxc:B, 7xxc:D, 7xxc:E, 7xxc:G, 7xxc:F, 7xxc:H, 7xxd:A, 7xxd:B, 7xxd:C, 7xxd:D, 7xxd:E, 7xxd:F, 7xxd:G, 7xxd:H, 7xxm:A, 7xxm:C, 7xxm:B, 7xxm:D, 7xxm:E, 7xxm:G, 7xxm:F, 7xxm:H, 7xxp:A, 7xxp:B, 7xxp:C, 7xxp:D, 7xxp:E, 7xxp:F, 7xxp:G, 7xxp:H, 7xxr:A, 7xxr:C, 7xxr:B, 7xxr:D, 7xxr:E, 7xxr:G, 7xxr:F, 7xxr:H, 7xye:A, 7xye:B, 7xye:C, 7xye:D, 7xye:E, 7xye:F, 7xye:G, 7xye:H, 7xyl:A, 7xyl:C, 7xyl:B, 7xyl:D, 7xyl:E, 7xyl:G, 7xyl:F, 7xyl:H, 7y0x:A, 7y0x:C, 7y0x:B, 7y0x:D, 7y0x:E, 7y0x:G, 7y0x:F, 7y0x:H
2 6j38:A 368 318 0.1953 0.2473 0.2862 3.46e-06 6j38:B, 6j39:A, 6j39:B
3 7cyx:A 363 182 0.0944 0.1212 0.2418 0.013 7cyx:B
4 3if9:A 364 195 0.1009 0.1291 0.2410 0.15 3if9:B, 3if9:C, 3if9:D, 1ng3:A, 1ng3:B, 1ng4:A, 1ng4:B, 1ryi:A, 1ryi:B, 1ryi:C, 1ryi:D
5 4ysh:A 370 366 0.2146 0.2703 0.2732 0.20 4ysh:B
6 6pxs:A 370 233 0.1180 0.1486 0.2361 0.34 6pxs:B, 6pxs:C, 6pxs:D
7 3jsk:A 292 46 0.0365 0.0582 0.3696 0.46 3jsk:B, 3jsk:C, 3jsk:D, 3jsk:E, 3jsk:F, 3jsk:G, 3jsk:H, 3jsk:I, 3jsk:J, 3jsk:K, 3jsk:L, 3jsk:M, 3jsk:N, 3jsk:O, 3jsk:P
8 4rl6:A 414 101 0.0558 0.0628 0.2574 0.60 4rl6:B
9 3fpz:A 311 46 0.0365 0.0547 0.3696 0.60 3fpz:B, 4y4l:A, 4y4l:B, 4y4l:C, 4y4l:D
10 8asi:B 433 148 0.0858 0.0924 0.2703 2.4 8asi:F, 8asj:B, 8asj:F, 2fyn:A, 2fyn:D, 2fyn:G, 2fyn:J, 2fyn:M, 2fyn:P, 5kkz:A, 5kkz:E, 5kkz:K, 5kkz:O, 5kli:A, 5kli:E, 5kli:K, 5kli:O, 6nhh:A, 6nhh:E, 6nin:A, 6nin:E, 6nin:K, 6nin:O, 6nin:S, 6nin:W, 2qjk:A, 2qjk:D, 2qjk:G, 2qjk:J, 2qjk:M, 2qjk:P, 2qjp:A, 2qjp:D, 2qjp:G, 2qjp:J, 2qjy:A, 2qjy:D, 2qjy:G, 2qjy:J, 2qjy:M, 2qjy:P, 7tce:A, 7tce:E, 7tce:K, 7tce:O, 7tlj:A, 7tlj:E
11 6c95:B 160 73 0.0451 0.1313 0.2877 3.4 6ppl:C, 6pw9:C
12 5n1t:A 393 66 0.0451 0.0534 0.3182 5.6
13 3n9t:A 286 43 0.0343 0.0559 0.3721 5.7
14 8btt:B 484 102 0.0601 0.0579 0.2745 7.3
15 8j2y:A 327 46 0.0386 0.0550 0.3913 7.8 8j2y:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218