Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDNGNYFTYTGSGGSSDQKLTN
NNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERSGFLVWRYLLRRDDTE
PEPWTREGKDRTRQLGLTMQYPEGYLEALANKEKSR

The query sequence (length=196) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2zkd:A 210 197 0.9337 0.8714 0.9289 2.01e-132 3f8i:A, 3f8i:B, 3f8j:B, 3fde:A, 3fde:B, 6m2v:B, 6m2v:A, 2zkd:B, 2zke:A, 2zkf:A, 2zo0:B, 2zo1:B, 2zo2:B
2 3clz:B 210 203 0.8469 0.7905 0.8177 9.45e-120 3clz:A, 3clz:C, 3clz:D, 8jig:A, 8jig:B, 6vcs:A, 6vcs:B, 6vcs:E
3 4pw7:E 198 195 0.7245 0.7172 0.7282 5.20e-101 4pw5:A, 4pw5:B, 4pw5:E, 4pw5:F, 4pw6:A, 4pw6:B, 4pw7:A, 4pw7:B, 4pw7:F
4 4ygi:A 150 172 0.3214 0.4200 0.3663 3.43e-22 3q0b:X, 3q0c:X, 3q0c:A, 3q0d:X, 3q0d:A, 3q0f:A, 3q0f:X
5 6a5n:A 502 175 0.3112 0.1215 0.3486 1.03e-21
6 6a5m:A 488 175 0.3265 0.1311 0.3657 1.28e-20 6a5k:A
7 6ghs:A 285 135 0.2806 0.1930 0.4074 1.82e-20
8 4qen:A 472 182 0.3061 0.1271 0.3297 9.30e-17 4qeo:A, 4qep:A
9 4nj5:A 482 196 0.2755 0.1120 0.2755 1.10e-07
10 5mg5:L 396 32 0.0714 0.0354 0.4375 0.84 5mg5:C, 5mg5:O, 5mg5:R
11 5zmm:D 489 35 0.0714 0.0286 0.4000 3.0
12 5zmm:A 530 35 0.0714 0.0264 0.4000 3.5 5zmm:B, 5zmm:C, 5zmm:E, 5zmm:F, 5zmn:A, 5zmo:A
13 8uu6:W 102 46 0.0765 0.1471 0.3261 4.7 8a57:X, 8a5i:X, 8a63:X, 7nhn:X, 8uu4:W, 8uu5:W, 8uu7:W, 8uu8:W, 8uu9:W, 8uua:W
14 6gy5:A 285 41 0.0612 0.0421 0.2927 7.3
15 1lck:A 164 35 0.0612 0.0732 0.3429 9.5 1bhf:A, 1cwd:L, 1cwe:A, 1cwe:C, 1fbz:A, 1fbz:B, 2iim:A, 1ijr:A, 1lcj:A, 1lkk:A, 1lkl:A, 1x27:A, 1x27:B, 1x27:C, 1x27:D, 1x27:E, 1x27:F

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218